# HG changeset patch
# User fubar
# Date 1393817521 18000
# Node ID 9414bbf5579b54c0f7b893d72ca4ac3c98100ca2
# Parent  34ef458b7fd966643f4476874fbe879e0d248dd2
Uploaded

diff -r 34ef458b7fd9 -r 9414bbf5579b tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Mar 02 22:25:13 2014 -0500
+++ b/tool_dependencies.xml	Sun Mar 02 22:32:01 2014 -0500
@@ -18,7 +18,7 @@
                     </repository>
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>               
-                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH runme.R </action>
+                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $REPOSITORY_INSTALL_DIR/runme.R </action>
             </actions>
         </install>
         <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs