# HG changeset patch
# User fubar
# Date 1393817718 18000
# Node ID 8c96a2d95436aae9f9fe14909bc7583f7d04a63d
# Parent  9414bbf5579b54c0f7b893d72ca4ac3c98100ca2
Uploaded

diff -r 9414bbf5579b -r 8c96a2d95436 tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Mar 02 22:32:01 2014 -0500
+++ b/tool_dependencies.xml	Sun Mar 02 22:35:18 2014 -0500
@@ -17,8 +17,10 @@
                         <package name="r303" version="3.0.3" />
                     </repository>
                 </action>
-                <action type="make_directory">$INSTALL_DIR</action>               
-                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $REPOSITORY_INSTALL_DIR/runme.R </action>
+                <action type="make_directory">$INSTALL_DIR</action>     
+                <action type="shell_command">echo `ls -l`</action>
+                          
+                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH ./runme.R </action>
             </actions>
         </install>
         <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs