# HG changeset patch # User fubar # Date 1393817718 18000 # Node ID 8c96a2d95436aae9f9fe14909bc7583f7d04a63d # Parent 9414bbf5579b54c0f7b893d72ca4ac3c98100ca2 Uploaded diff -r 9414bbf5579b -r 8c96a2d95436 tool_dependencies.xml --- a/tool_dependencies.xml Sun Mar 02 22:32:01 2014 -0500 +++ b/tool_dependencies.xml Sun Mar 02 22:35:18 2014 -0500 @@ -17,8 +17,10 @@ <package name="r303" version="3.0.3" /> </repository> </action> - <action type="make_directory">$INSTALL_DIR</action> - <action type="shell_command">export PATH=$PATH && R CMD BATCH $REPOSITORY_INSTALL_DIR/runme.R </action> + <action type="make_directory">$INSTALL_DIR</action> + <action type="shell_command">echo `ls -l`</action> + + <action type="shell_command">export PATH=$PATH && R CMD BATCH ./runme.R </action> </actions> </install> <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs