# HG changeset patch
# User fubar
# Date 1374906054 14400
# Node ID 8272815ba8ce2fee33a69e48bf3de0f370da73f7
# Parent  f542654faa3b02a2ccf48a1315f585c7264f4320
Uploaded

diff -r f542654faa3b -r 8272815ba8ce rgedgeR/rgedgeRpaired.xml
--- a/rgedgeR/rgedgeRpaired.xml	Sat Jul 27 02:18:41 2013 -0400
+++ b/rgedgeR/rgedgeRpaired.xml	Sat Jul 27 02:20:54 2013 -0400
@@ -671,7 +671,7 @@
 history_gmt=""
 out_edgeR = F
 out_DESeq2 = F
-out_VOOM = "${out_VOOM}"
+out_VOOM = "$out_VOOM"
 doDESeq2 = $DESeq2.doDESeq2 # make these T or F
 doVoom = $doVoom
 doCamera = F 
@@ -679,18 +679,18 @@
 edgeR_priordf = 0
 
 
-#if ${doVoom} == "T":
-  out_VOOM = "${out_VOOM}"
+#if $doVoom == "T":
+  out_VOOM = "$out_VOOM"
 #end if
 
-#if ${DESeq2.doDESeq2} == "T":
-  out_DESeq2 = "${out_DESeq2}"
-  DESeq_fitType = "${DESeq2.DESeq_fitType}"
+#if $DESeq2.doDESeq2 == "T":
+  out_DESeq2 = "$out_DESeq2"
+  DESeq_fitType = "$DESeq2.DESeq_fitType"
 #end if
 
-#if ${edgeR.doedgeR} == "T":
-  out_edgeR = "${out_edgeR}"
-  edgeR_priordf = ${edgeR.edgeR_priordf}
+#if $edgeR.doedgeR == "T":
+  out_edgeR = "$out_edgeR"
+  edgeR_priordf = $edgeR.edgeR_priordf
 #end if
 
 Out_Dir = "$html_file.files_path"