# HG changeset patch
# User fubar
# Date 1392082646 18000
# Node ID 675cc60959f0c0e722c1c9dd795e6df77081bf8d
# Parent  d4fc5eb21a2e3b2520bd427df631adfb99523c2e
Uploaded

diff -r d4fc5eb21a2e -r 675cc60959f0 rgedgeRpaired_nocamera.xml
--- a/rgedgeRpaired_nocamera.xml	Mon Feb 10 20:32:57 2014 -0500
+++ b/rgedgeRpaired_nocamera.xml	Mon Feb 10 20:37:26 2014 -0500
@@ -697,7 +697,7 @@
     #newCountDataSet(workCM, group)
     deSeqDatsizefac = estimateSizeFactors(deSEQds)
     deSeqDatdisp = estimateDispersions(deSeqDatsizefac,fitType=DESeq_fitType)
-    resDESeq = nbinomWaldTest(deSeqDatdisp, pAdjustMethod=fdrtype)
+    resDESeq = nbinomWaldTest(deSeqDatdisp)
     rDESeq = as.data.frame(results(resDESeq))
     rDESeq = cbind(Contig=rownames(workCM),rDESeq,NReads=cmrowsums,URL=contigurls)
     srDESeq = rDESeq[order(rDESeq\$pvalue),]