# HG changeset patch # User fubar # Date 1392704185 18000 # Node ID 551a73ee115d2ca478360579f21c79813eefa282 # Parent a83f8effff05bbfb6bb06414f1a8766499d19550 Uploaded diff -r a83f8effff05 -r 551a73ee115d tool_dependencies.xml --- a/tool_dependencies.xml Tue Feb 18 01:12:28 2014 -0500 +++ b/tool_dependencies.xml Tue Feb 18 01:16:25 2014 -0500 @@ -24,7 +24,7 @@ <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos='http://cran.us.r-project.org')" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "quit(save='no')" >> $INSTALL_DIR/runme.R</action> - <action type="shell_command">echo "PATH=$PATH"</action> + <action type="shell_command">echo "PATH=$PATH 1>&2"</action> <action type="shell_command">export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R </action> </actions> </install>