# HG changeset patch # User fubar # Date 1416911807 18000 # Node ID 51f998262ada8971362d7fba31a99de22a78dde2 # Parent 6ded550dcc7d6d8b8ed5b9f3b97331dd3340ebf6 Uploaded diff -r 6ded550dcc7d -r 51f998262ada rgedgeRpaired_nocamera.xml --- a/rgedgeRpaired_nocamera.xml Sun Nov 23 07:18:05 2014 -0500 +++ b/rgedgeRpaired_nocamera.xml Tue Nov 25 05:36:47 2014 -0500 @@ -546,7 +546,8 @@ DGLM = glmFit(myDGEList,design=mydesign) DE = glmLRT(DGLM,coef=ncol(DGLM\$design)) # always last one - subject is first if needed efflib = myDGEList\$samples\$lib.size*myDGEList\$samples\$norm.factors - normData = (1e+06*myDGEList\$counts/efflib) + normData = cpm(myDGEList) + ### normData = (1e+06*myDGEList\$counts/efflib) uoutput = cbind( Name=as.character(rownames(myDGEList\$counts)), DE\$table,