# HG changeset patch
# User fubar
# Date 1393823430 18000
# Node ID 442d906d86821e2e517739548184e3b6fd89b5ca
# Parent  39f7ed5b2fc1acbbd2538c70a8a128ae6478633a
Uploaded

diff -r 39f7ed5b2fc1 -r 442d906d8682 rgedgeRpaired_nocamera.xml
--- a/rgedgeRpaired_nocamera.xml	Sun Mar 02 23:45:54 2014 -0500
+++ b/rgedgeRpaired_nocamera.xml	Mon Mar 03 00:10:30 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="rgDifferentialCount" name="Differential_Count" version="0.24">
+<tool id="rgDifferentialCount" name="Differential_Count" version="0.23">
   <description>models using BioConductor packages</description>
   <requirements>
       <requirement type="package" version="2.14">biocbasics</requirement>
@@ -786,7 +786,8 @@
   doGSEA(y=DGEList,design=mydesign,histgmt=histgmt,bigmt=bigmt,ntest=20,myTitle=myTitle,
     outfname=paste(mt,"GSEA.xls",sep="_"),fdrthresh=fdrthresh,fdrtype=fdrtype)
   }
-
+  counts.dataframe = c()
+  vennmain = 'no venn'
   if ((doDESeq2==T) || (doVoom==T) || (doedgeR==T)) {
     if ((doVoom==T) && (doDESeq2==T) && (doedgeR==T)) {
         vennmain = paste(mt,'Voom,edgeR and DESeq2 overlap at FDR=',fdrthresh)