# HG changeset patch
# User fubar
# Date 1393474952 18000
# Node ID 3bdf17623d87aacb5bd89be9eabd84543025b927
# Parent  b21cd7bec41fc0852244c5a09ab91ed768edd36a
Uploaded

diff -r b21cd7bec41f -r 3bdf17623d87 rgedgeRpaired_nocamera.xml
--- a/rgedgeRpaired_nocamera.xml	Wed Feb 26 21:49:45 2014 -0500
+++ b/rgedgeRpaired_nocamera.xml	Wed Feb 26 23:22:32 2014 -0500
@@ -758,8 +758,8 @@
          DGEList = estimateGLMTrendedDisp(DGEList,mydesign)
          DGEList = estimateGLMTagwiseDisp(DGEList,mydesign)
          }
-      calcNormFactors(DGEList) # -> object$samples$norm.factors
-      ls = colSums(DGEList$counts) * DGEList$samples$norm.factors
+      calcNormFactors(DGEList) 
+      ls = colSums(DGEList\$counts) * DGEList\$samples\$norm.factors
       pdf("VOOM_mean_variance_plot.pdf")
       dat.voomed = voom(DGEList, mydesign, plot = TRUE, lib.size = ls)
       dev.off()