# HG changeset patch
# User fubar
# Date 1393496991 18000
# Node ID 2c7b33c84904d879afdbef906bd45347581fc4c8
# Parent  7de681a7c511e5635483efb6ff797d457a5b7d38
Uploaded

diff -r 7de681a7c511 -r 2c7b33c84904 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Feb 27 05:00:05 2014 -0500
+++ b/tool_dependencies.xml	Thu Feb 27 05:29:51 2014 -0500
@@ -25,7 +25,7 @@
                 <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos='http://cran.us.r-project.org')" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "quit(save='no')" &gt;&gt; $INSTALL_DIR/runme.R</action>                
                 <action type="shell_command">echo "PATH=$PATH 1&gt;&amp;2"</action>                
-                <action type="shell_command">export PATH=$PATH &amp;&amp; export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; R CMD BATCH $INSTALL_DIR/runme.R </action>
+                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $INSTALL_DIR/runme.R </action>
             </actions>
         </install>
         <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs