Mercurial > repos > fubar > differential_count_models
diff test-data/gentestdata.sh @ 36:b8f9b2c64202 draft
Uploaded
author | fubar |
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date | Sun, 22 Dec 2013 01:48:38 -0500 |
parents | c0fa3dde02d9 |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gentestdata.sh Sun Dec 22 01:48:38 2013 -0500 @@ -0,0 +1,9 @@ +#!/bin/bash +# generate test data for rgGSEA +# ross lazarus June 2013 +# adjust gseajar_path ! +GSEAJAR_PATH=/home/rlazarus/galaxy-central/tool_dependency_dir/gsea_jar/2.0.12/fubar/rg_gsea_test/8e291f464aa0/jars/gsea2-2.0.12.jar +python ../rgGSEA.py --input_tab "gsea_test_DGE.xls" --adjpvalcol "5" --signcol "2" --idcol "1" --outhtml "gseatestout.html" --input_name "gsea_test" --setMax "500" --setMin "15" --nPerm "10" --plotTop "20" --gsea_jar "$GSEAJAR_PATH" --output_dir "gseatestout" --mode "Max_probe" +--title "GSEA test" --builtin_gmt "gseatestdata.gmt" + +