Mercurial > repos > fubar > differential_count_models

diff tool_dependencies.xml @ 94:9414bbf5579b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Sun, 02 Mar 2014 22:32:01 -0500
parents 34ef458b7fd9
children 8c96a2d95436
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Mar 02 22:25:13 2014 -0500
+++ b/tool_dependencies.xml	Sun Mar 02 22:32:01 2014 -0500
@@ -18,7 +18,7 @@
                     </repository>
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>               
-                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH runme.R </action>
+                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $REPOSITORY_INSTALL_DIR/runme.R </action>
             </actions>
         </install>
         <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs