Mercurial > repos > fubar > differential_count_models

diff tool_dependencies.xml @ 95:8c96a2d95436 draft

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author fubar
date Sun, 02 Mar 2014 22:35:18 -0500
parents 9414bbf5579b
children e7d02e6b253c
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Mar 02 22:32:01 2014 -0500
+++ b/tool_dependencies.xml	Sun Mar 02 22:35:18 2014 -0500
@@ -17,8 +17,10 @@
                         <package name="r303" version="3.0.3" />
                     </repository>
                 </action>
-                <action type="make_directory">$INSTALL_DIR</action>               
-                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $REPOSITORY_INSTALL_DIR/runme.R </action>
+                <action type="make_directory">$INSTALL_DIR</action>     
+                <action type="shell_command">echo `ls -l`</action>
+                          
+                <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH ./runme.R </action>
             </actions>
         </install>
         <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs