diff tool_dependencies.xml @ 62:7b3d0a330e57 draft

Uploaded

--- a/tool_dependencies.xml	Mon Feb 10 05:47:52 2014 -0500
+++ b/tool_dependencies.xml	Mon Feb 10 19:03:20 2014 -0500
@@ -1,14 +1,5 @@
 <?xml version="1.0"?>
 <tool_dependency>
-<!--
-Atlas will not compile for me - it thinks we have autoscaling on
-so we need libopenblas-base installed on all nodes after commenting this and the set environment reference...
-grrr
--->
-    <package name="atlas" version="3.11.11">
-        <repository changeset_revision="02bc9f241131" name="package_atlas_3_11" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-
     <package name="r302" version="3.0.2">
         <repository changeset_revision="e5d9e2ca3ba6" name="package_r302" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
@@ -25,9 +16,6 @@
                     <repository changeset_revision="e5d9e2ca3ba6" name="package_r302" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                         <package name="r302" version="3.0.2" />
                     </repository>
-                    <repository changeset_revision="02bc9f241131" name="package_atlas_3_11" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="atlas" version="3.11.11" />
-                    </repository>
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>
                 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" &gt; $INSTALL_DIR/runme.R</action>