Mercurial > repos > fubar > differential_count_models

diff tool_dependencies.xml @ 73:551a73ee115d draft

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Uploaded
author fubar
date Tue, 18 Feb 2014 01:16:25 -0500
parents a83f8effff05
children 8596080a8326
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line diff
--- a/tool_dependencies.xml	Tue Feb 18 01:12:28 2014 -0500
+++ b/tool_dependencies.xml	Tue Feb 18 01:16:25 2014 -0500
@@ -24,7 +24,7 @@
                 <action type="shell_command">echo "biocLite(installme)" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos='http://cran.us.r-project.org')" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "quit(save='no')" &gt;&gt; $INSTALL_DIR/runme.R</action>                
-                <action type="shell_command">echo "PATH=$PATH"</action>                
+                <action type="shell_command">echo "PATH=$PATH 1&gt;&amp;2"</action>                
                 <action type="shell_command">export PATH=$PATH &amp;&amp; export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; R CMD BATCH $INSTALL_DIR/runme.R </action>
             </actions>
         </install>