Mercurial > repos > fubar > differential_count_models
comparison tool_dependencies.xml @ 87:fd5ee59e4536 draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 27 Feb 2014 02:31:03 -0500 |
| parents | 9791086643ef |
| children | 6b95cd9e2648 |
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| 86:bfb60e6c1226 | 87:fd5ee59e4536 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="r303" version="3.0.3"> | 3 <package name="r303" version="3.0.3"> |
| 4 <repository changeset_revision="113ad1e5336c" name="package_r303" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 4 <repository changeset_revision="826f08ed8859" name="package_r303" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> |
| 5 </package> | 5 </package> |
| 6 <package name="ghostscript" version="9.07"> | 6 <package name="ghostscript" version="9.07"> |
| 7 <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 7 <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> |
| 8 </package> | 8 </package> |
| 9 <package name="graphicsmagick" version="1.3.18"> | 9 <package name="graphicsmagick" version="1.3.18"> |
| 12 <package name="biocbasics" version="2.14"> | 12 <package name="biocbasics" version="2.14"> |
| 13 <install version="1.0"> | 13 <install version="1.0"> |
| 14 <actions> | 14 <actions> |
| 15 <action type="set_environment_for_install"> | 15 <action type="set_environment_for_install"> |
| 16 <repository changeset_revision="c881f61d208e" name="package_r302" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 16 <repository changeset_revision="c881f61d208e" name="package_r302" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 17 <package name="r302" version="3.0.2" /> | 17 <package name="r303" version="3.0.3" /> |
| 18 </repository> | 18 </repository> |
| 19 </action> | 19 </action> |
| 20 <action type="make_directory">$INSTALL_DIR</action> | 20 <action type="make_directory">$INSTALL_DIR</action> |
| 21 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> | 21 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> |
| 22 <action type="shell_command">echo "installme=c('edgeR','limma','DESeq','DESeq2')" >> $INSTALL_DIR/runme.R</action> | 22 <action type="shell_command">echo "installme=c('edgeR','limma','DESeq','DESeq2')" >> $INSTALL_DIR/runme.R</action> |