Mercurial > repos > fubar > differential_count_models

comparison test-data/gentestdata.sh @ 53:b608991544f5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Sun, 09 Feb 2014 19:04:12 -0500
parents c0fa3dde02d9
children
comparison
equal deleted inserted replaced
52:95bac0bcb86e 53:b608991544f5
1 #!/bin/bash
2 # generate test data for rgGSEA
3 # ross lazarus June 2013
4 # adjust gseajar_path !
5 GSEAJAR_PATH=/home/rlazarus/galaxy-central/tool_dependency_dir/gsea_jar/2.0.12/fubar/rg_gsea_test/8e291f464aa0/jars/gsea2-2.0.12.jar
6 python ../rgGSEA.py --input_tab "gsea_test_DGE.xls" --adjpvalcol "5" --signcol "2" --idcol "1" --outhtml "gseatestout.html" --input_name "gsea_test" --setMax "500" --setMin "15" --nPerm "10" --plotTop "20" --gsea_jar "$GSEAJAR_PATH" --output_dir "gseatestout" --mode "Max_probe"
7 --title "GSEA test" --builtin_gmt "gseatestdata.gmt"
8
9