Mercurial > repos > fubar > differential_count_models

comparison tool_dependencies.xml @ 94:9414bbf5579b draft

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Uploaded
author fubar
date Sun, 02 Mar 2014 22:32:01 -0500
parents 34ef458b7fd9
children 8c96a2d95436
comparison
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93:34ef458b7fd9 94:9414bbf5579b
16 <repository changeset_revision="4c934f6b342e" name="package_r303" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 16 <repository changeset_revision="4c934f6b342e" name="package_r303" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
17 <package name="r303" version="3.0.3" /> 17 <package name="r303" version="3.0.3" />
18 </repository> 18 </repository>
19 </action> 19 </action>
20 <action type="make_directory">$INSTALL_DIR</action> 20 <action type="make_directory">$INSTALL_DIR</action>
21 <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH runme.R </action> 21 <action type="shell_command">export PATH=$PATH &amp;&amp; R CMD BATCH $REPOSITORY_INSTALL_DIR/runme.R </action>
22 </actions> 22 </actions>
23 </install> 23 </install>
24 <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs 24 <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs
25 It's clunky but this is the most convenient way I could get anything installed into the package_r3 25 It's clunky but this is the most convenient way I could get anything installed into the package_r3
26 Note we use cran at fred hutch since no fastest mirror thingy 26 Note we use cran at fred hutch since no fastest mirror thingy