Mercurial > repos > fubar > differential_count_models
comparison tool_dependencies.xml @ 95:8c96a2d95436 draft
Uploaded
| author | fubar |
|---|---|
| date | Sun, 02 Mar 2014 22:35:18 -0500 |
| parents | 9414bbf5579b |
| children | e7d02e6b253c |
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| 94:9414bbf5579b | 95:8c96a2d95436 |
|---|---|
| 15 <action type="set_environment_for_install"> | 15 <action type="set_environment_for_install"> |
| 16 <repository changeset_revision="4c934f6b342e" name="package_r303" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 16 <repository changeset_revision="4c934f6b342e" name="package_r303" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 17 <package name="r303" version="3.0.3" /> | 17 <package name="r303" version="3.0.3" /> |
| 18 </repository> | 18 </repository> |
| 19 </action> | 19 </action> |
| 20 <action type="make_directory">$INSTALL_DIR</action> | 20 <action type="make_directory">$INSTALL_DIR</action> |
| 21 <action type="shell_command">export PATH=$PATH && R CMD BATCH $REPOSITORY_INSTALL_DIR/runme.R </action> | 21 <action type="shell_command">echo `ls -l`</action> |
| 22 | |
| 23 <action type="shell_command">export PATH=$PATH && R CMD BATCH ./runme.R </action> | |
| 22 </actions> | 24 </actions> |
| 23 </install> | 25 </install> |
| 24 <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs | 26 <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs |
| 25 It's clunky but this is the most convenient way I could get anything installed into the package_r3 | 27 It's clunky but this is the most convenient way I could get anything installed into the package_r3 |
| 26 Note we use cran at fred hutch since no fastest mirror thingy | 28 Note we use cran at fred hutch since no fastest mirror thingy |