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comparison rgedgeRpaired_nocamera.xml @ 138:2542743b2861 draft

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author fubar
date Tue, 06 Jan 2015 21:57:24 -0500
parents 0de946608423
children c50bdc1b7fa7
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137:48a6a92bbc30 138:2542743b2861
150 # 1 - Output Dir 150 # 1 - Output Dir
151 151
152 # Original edgeR code by: S.Lunke and A.Kaspi 152 # Original edgeR code by: S.Lunke and A.Kaspi
153 reallybig = log10(.Machine\$double.xmax) 153 reallybig = log10(.Machine\$double.xmax)
154 reallysmall = log10(.Machine\$double.xmin) 154 reallysmall = log10(.Machine\$double.xmin)
155 library("stringr")
156 library("gplots") 155 library("gplots")
157 library("edgeR") 156 library("edgeR")
158 hmap2 = function(cmat,nsamp=100,outpdfname='heatmap2.pdf', TName='Treatment',group=NA,myTitle='title goes here') 157 hmap2 = function(cmat,nsamp=100,outpdfname='heatmap2.pdf', TName='Treatment',group=NA,myTitle='title goes here')
159 { 158 {
160 # Perform clustering for significant pvalues after controlling FWER 159 # Perform clustering for significant pvalues after controlling FWER