Mercurial > repos > fubar > differential_count_models
comparison tool_dependencies.xml @ 132:0de946608423 draft
Uploaded
| author | fubar |
|---|---|
| date | Tue, 06 Jan 2015 02:20:55 -0500 |
| parents | |
| children |
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| 131:21b218a7429f | 132:0de946608423 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="R" version="3.1.2"> | |
| 4 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="graphicsmagick" version="1.3.18"> | |
| 7 <repository changeset_revision="bff3f66adff2" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="ghostscript" version="9.10"> | |
| 10 <repository changeset_revision="9345d2740f0c" name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 12 | |
| 13 <package name="biocbasics" version="2.14"> | |
| 14 <install version="1.0"> | |
| 15 <actions> | |
| 16 <action type="setup_r_environment"> | |
| 17 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 18 <package name="R" version="3.1.2" /> | |
| 19 </repository> | |
| 20 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/survival_2.37-7.tar.gz?raw=true</package> | |
| 21 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/lars_1.2.tar.gz?raw=true</package> | |
| 22 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/lattice_0.20-29.tar.gz?raw=true</package> | |
| 23 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/latticeExtra_0.6-26.tar.gz?raw=true</package> | |
| 24 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/Matrix_1.1-4.tar.gz?raw=true</package> | |
| 25 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/glmnet_1.9-8.tar.gz?raw=true</package> | |
| 26 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/KernSmooth_2.23-13.tar.gz?raw=true</package> | |
| 27 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/numDeriv_2012.9-1.tar.gz?raw=true</package> | |
| 28 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/lava_1.3.tar.gz?raw=true</package> | |
| 29 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/prodlim_1.5.1.tar.gz?raw=true</package> | |
| 30 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/codetools_0.2-9.tar.gz?raw=true</package> | |
| 31 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/iterators_1.0.7.tar.gz?raw=true</package> | |
| 32 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/foreach_1.4.2.tar.gz?raw=true</package> | |
| 33 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/Formula_1.1-2.tar.gz?raw=true</package> | |
| 34 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/RColorBrewer_1.1-2.tar.gz?raw=true</package> | |
| 35 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/cluster_1.15.3.tar.gz?raw=true</package> | |
| 36 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rpart_4.1-8.tar.gz?raw=true</package> | |
| 37 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/nnet_7.3-8.tar.gz?raw=true</package> | |
| 38 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/acepack_1.3-3.3.tar.gz?raw=true</package> | |
| 39 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/foreign_0.8-61.tar.gz?raw=true</package> | |
| 40 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/Hmisc_3.14-6.tar.gz?raw=true</package> | |
| 41 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/SparseM_1.05.tar.gz?raw=true</package> | |
| 42 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/quantreg_5.05.tar.gz?raw=true</package> | |
| 43 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/nlme_3.1-118.tar.gz?raw=true</package> | |
| 44 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/polspline_1.1.9.tar.gz?raw=true</package> | |
| 45 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/mvtnorm_1.0-2.tar.gz?raw=true</package> | |
| 46 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/TH.data_1.0-5.tar.gz?raw=true</package> | |
| 47 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/zoo_1.7-11.tar.gz?raw=true</package> | |
| 48 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/sandwich_2.3-2.tar.gz?raw=true</package> | |
| 49 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/multcomp_1.3-8.tar.gz?raw=true</package> | |
| 50 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rms_4.2-1.tar.gz?raw=true</package> | |
| 51 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/pec_2.4.4.tar.gz?raw=true</package> | |
| 52 | |
| 53 </action> | |
| 54 </actions> | |
| 55 </install> | |
| 56 <readme> | |
| 57 Differential gene expression analysis | |
| 58 You may need libxml2-dev for XML to compile | |
| 59 Ubuntu has a bug with libgfortran. To fix that create a symlink like: sudo ln -s /usr/lib/x86_64-linux-gnu/libgfortran.so.3 /usr/lib/x86_64-linux-gnu/libgfortran.so | |
| 60 </readme> | |
| 61 </package> | |
| 62 </tool_dependency> |