Mercurial > repos > fubar > data_manager_rnasta
diff data_manager/rnastar_index_builder.xml @ 1:ebadd2c92958 draft
Uploaded
author | fubar |
---|---|
date | Mon, 29 Sep 2014 20:47:45 -0400 |
parents | 84f6e67cbae5 |
children | 8a2d16bfdae2 |
line wrap: on
line diff
--- a/data_manager/rnastar_index_builder.xml Mon Sep 29 20:25:10 2014 -0400 +++ b/data_manager/rnastar_index_builder.xml Mon Sep 29 20:47:45 2014 -0400 @@ -6,7 +6,7 @@ <command interpreter="python"> rnastar_index_builder.py --out_file "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" ---data_table_name "rnastar_indexes" --out_index_path "$out_file.extra_files_path" --runThreadN 1 +--data_table_name "rnastar_indexes" --out_index_path "${out_file.extra_files_path}" --runThreadN 1 #if $genemodel.modelformat=="gff3": --sjdbOverhang "${genemodel.sjdbOverhang}" --sjdbGTFfile "${genemodel.sjdbGTFfile}"