# HG changeset patch
# User fubar
# Date 1373504553 14400
# Node ID fb301c318fec64617d4aeed52293d32d17dda361
# Parent  e49657d6921ece56cafcc6b56444f593f669d34b
Uploaded

diff -r e49657d6921e -r fb301c318fec rgclustal/tool_dependencies.xml
--- a/rgclustal/tool_dependencies.xml	Wed Jul 10 20:38:37 2013 -0400
+++ b/rgclustal/tool_dependencies.xml	Wed Jul 10 21:02:33 2013 -0400
@@ -4,8 +4,9 @@
         <install version="1.0"> 
            <actions>
                 <action type="make_directory">$INSTALL_DIR</action>
-                <action type="download_by_url">http://www.clustal.org/download/current/clustalw-2.1.tar.gz</action>
-                <action type="shell_command">./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; cp $INSTALL_DIR/src/clustalw $INSTALL_DIR</action>
+                <action type="download_by_url" target_filename="clustalw-2.1.tgz">http://www.clustal.org/download/current/clustalw-2.1.tar.gz</action>
+                <action type="shell_command">./configure --prefix=$INSTALL_DIR &amp;&amp; make</action>
+                <action type="move_file"><source>$INSTALL_DIR/src/clustalw2</source><destination>$INSTALL_DIR</destination></action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                 </action>