# HG changeset patch
# User fubar
# Date 1373515385 14400
# Node ID 87d5e4e4aa0758c511b75d173a864d1912b31dee
# Parent  16746b3048e46225010f4fd7c98c09ee28ba9859
Uploaded

diff -r 16746b3048e4 -r 87d5e4e4aa07 rgclustal/tool_dependencies.xml
--- a/rgclustal/tool_dependencies.xml	Wed Jul 10 23:54:13 2013 -0400
+++ b/rgclustal/tool_dependencies.xml	Thu Jul 11 00:03:05 2013 -0400
@@ -4,8 +4,8 @@
         <install version="1.0"> 
            <actions>
                 <action type="download_by_url">http://www.clustal.org/download/current/clustalw-2.1.tar.gz</action>
-                <action type="shell_command">./configure --prefix=$INSTALL_DIR &amp;&amp; make</action>
-                <action type="move_file"><source>$INSTALL_DIR/src/clustalw2</source><destination>$INSTALL_DIR</destination></action>
+                <action type="shell_command">./configure &amp;&amp; make</action>
+                <action type="move_file"><source>$REPOSITORY_INSTALL_DIR/src/clustalw2</source><destination>$INSTALL_DIR</destination></action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                 </action>