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comparison rgclustal/rgClustalw.xml @ 1:e49657d6921e draft

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Uploaded
author fubar
date Wed, 10 Jul 2013 20:38:37 -0400
parents 332e4617d267
children 98273d7fd5da
comparison
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0:332e4617d267 1:e49657d6921e
1 <tool id="clustalw" name="ClustalW" version="0.1"> 1 <tool id="clustalw" name="ClustalW" version="0.1">
2 <description>multiple sequence alignment program for DNA or proteins</description> 2 <description>multiple sequence alignment program for DNA or proteins</description>
3 <requirements>
4 <requirement type="package" version="2.1">package_clustalw</requirement>
5 </requirements>
3 <command> 6 <command>
4 #if ($range.mode=="part") 7 #if ($range.mode=="part")
5 clustalw2 -infile=$input -outfile=$output -OUTORDER=$out_order -RANGE=$range.seq_range_start,$range.seq_range_end 8 clustalw2 -infile=$input -outfile=$output -OUTORDER=$out_order -RANGE=$range.seq_range_start,$range.seq_range_end
6 #elif ($range.mode=="complete") 9 #elif ($range.mode=="complete")
7 clustalw2 -infile=$input -outfile=$output -OUTORDER=$out_order 10 clustalw2 -infile=$input -outfile=$output -OUTORDER=$out_order
8 #end if 11 #end if
9 #if ($outcontrol.outform=="clustal") 12 #if ($outcontrol.outform=="clustal")