# HG changeset patch
# User fcaramia
# Date 1371699270 14400
# Node ID 59062e4be3195427fbfa045e128a740bed584e12
# Parent  be74f9128239133c71c23eaba220b5a40e93d173
Uploaded

diff -r be74f9128239 -r 59062e4be319 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jun 19 23:24:07 2013 -0400
+++ b/tool_dependencies.xml	Wed Jun 19 23:34:30 2013 -0400
@@ -15,13 +15,13 @@
                 
                 <action type="download_file">https://github.com/genome/somatic-sniper/archive/master.zip</action>
                 <action type="download_file">https://github.com/genome/build-common/tarball/master</action>
-                <action type="shell_command">unzip master.zip &amp;&amp; ls -la somatic-sniper-master/</action>	
+                <action type="shell_command">unzip master.zip</action>	
 		<action type="shell_command">tar -xzvf master</action>
 		<action type="shell_command">rm -rf  somatic-sniper-master/build-common/</action>
 		<action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action>		
-                <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ &amp;&amp; ls -la somatic-sniper-master/</action>
+                <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ &amp;&amp; make</action>
                 <action type="move_directory_files">
-                    <source_directory>somatic-sniper-master/bin</source_directory>
+                    <source_directory>bin</source_directory>
                     <destination_directory>$INSTALL_DIR/bin</destination_directory>
                 </action> 
                 <action type="set_environment">