# HG changeset patch
# User fcaramia
# Date 1371453142 14400
# Node ID 29e07ec3249fb451b16803ad0a971e3738fa174c
# Parent  8c16a08d48e1e7df26aed1b5671cf896e6a4c37e
Uploaded

diff -r 8c16a08d48e1 -r 29e07ec3249f tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 17 03:00:00 2013 -0400
+++ b/tool_dependencies.xml	Mon Jun 17 03:12:22 2013 -0400
@@ -32,8 +32,8 @@
 		<action type="shell_command">make all</action>
 		<action type="make_directory">$INSTALL_DIR/bin</action>
 		<action type="move_directory_files">
-                    <source>bin</source>
-                    <destination>$INSTALL_DIR/bin</destination>
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                 </action>                                
 		<action type="set_environment">
 		   <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
@@ -53,6 +53,7 @@
                 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action>
 		<action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action>
 		<action type="make_directory">$INSTALL_DIR/bin</action>
+		<action type="make_directory">$INSTALL_DIR/bin/scripts</action>
 		<action type="move_file">
                     <source>contra.py</source>
                     <destination>$INSTALL_DIR/bin</destination>
@@ -62,8 +63,8 @@
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
 		<action type="move_directory_files">
-                    <source>scripts</source>
-                    <destination>$INSTALL_DIR/scripts</destination>
+                    <source_directory>scripts</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin/scripts</destination_directory>
                 </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>