# HG changeset patch
# User fcaramia
# Date 1371448240 14400
# Node ID 22ada2c07df04e4bf1d74aa5ebc99df0eedeec3e
# Parent  a6ed5ad78070c4308cfd7accf60c3ba55635451e
Uploaded

diff -r a6ed5ad78070 -r 22ada2c07df0 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 17 01:14:46 2013 -0400
+++ b/tool_dependencies.xml	Mon Jun 17 01:50:40 2013 -0400
@@ -36,7 +36,7 @@
            </actions>
        </install>
        <readme>
-		GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
+		GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools. g++ required
        </readme>
    </package>
    <package name="contra" version="2.0.4">
@@ -46,9 +46,13 @@
                 <action type="shell_command">rm -rf bedtools_installation_guide.txt</action>
                 <action type="shell_command">rm -rf BEDTools-User-Manual.v4.pdf</action>
                 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action>
-		<action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action>                                
+		<action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action>
+		<action type="move_directory_files">
+                    <source>./</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>                                
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>
         </install>