Mercurial > repos > fcaramia > contra
comparison tool_dependencies.xml @ 12:29e07ec3249f draft default tip
Uploaded
| author | fcaramia |
|---|---|
| date | Mon, 17 Jun 2013 03:12:22 -0400 |
| parents | 8c16a08d48e1 |
| children |
comparison
equal
deleted
inserted
replaced
| 11:8c16a08d48e1 | 12:29e07ec3249f |
|---|---|
| 30 <actions> | 30 <actions> |
| 31 <action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> | 31 <action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> |
| 32 <action type="shell_command">make all</action> | 32 <action type="shell_command">make all</action> |
| 33 <action type="make_directory">$INSTALL_DIR/bin</action> | 33 <action type="make_directory">$INSTALL_DIR/bin</action> |
| 34 <action type="move_directory_files"> | 34 <action type="move_directory_files"> |
| 35 <source>bin</source> | 35 <source_directory>bin</source_directory> |
| 36 <destination>$INSTALL_DIR/bin</destination> | 36 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 37 </action> | 37 </action> |
| 38 <action type="set_environment"> | 38 <action type="set_environment"> |
| 39 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 39 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 40 </action> | 40 </action> |
| 41 </actions> | 41 </actions> |
| 51 <action type="shell_command">rm -rf bedtools_installation_guide.txt</action> | 51 <action type="shell_command">rm -rf bedtools_installation_guide.txt</action> |
| 52 <action type="shell_command">rm -rf BEDTools-User-Manual.v4.pdf</action> | 52 <action type="shell_command">rm -rf BEDTools-User-Manual.v4.pdf</action> |
| 53 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action> | 53 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action> |
| 54 <action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action> | 54 <action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action> |
| 55 <action type="make_directory">$INSTALL_DIR/bin</action> | 55 <action type="make_directory">$INSTALL_DIR/bin</action> |
| 56 <action type="make_directory">$INSTALL_DIR/bin/scripts</action> | |
| 56 <action type="move_file"> | 57 <action type="move_file"> |
| 57 <source>contra.py</source> | 58 <source>contra.py</source> |
| 58 <destination>$INSTALL_DIR/bin</destination> | 59 <destination>$INSTALL_DIR/bin</destination> |
| 59 </action> | 60 </action> |
| 60 <action type="move_file"> | 61 <action type="move_file"> |
| 61 <source>baseline.py</source> | 62 <source>baseline.py</source> |
| 62 <destination>$INSTALL_DIR/bin</destination> | 63 <destination>$INSTALL_DIR/bin</destination> |
| 63 </action> | 64 </action> |
| 64 <action type="move_directory_files"> | 65 <action type="move_directory_files"> |
| 65 <source>scripts</source> | 66 <source_directory>scripts</source_directory> |
| 66 <destination>$INSTALL_DIR/scripts</destination> | 67 <destination_directory>$INSTALL_DIR/bin/scripts</destination_directory> |
| 67 </action> | 68 </action> |
| 68 <action type="set_environment"> | 69 <action type="set_environment"> |
| 69 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 70 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 70 </action> | 71 </action> |
| 71 </actions> | 72 </actions> |