# HG changeset patch # User eugen # Date 1345104785 14400 # Node ID 4abe38e3916eeae66fb76613fe10ebbf96d00f7c # Parent abbadfdcd3954cfd1bd9452d24a109a9ae02f8fe Uploaded diff -r abbadfdcd395 -r 4abe38e3916e bsmap_fasta.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bsmap_fasta.loc.sample Thu Aug 16 04:13:05 2012 -0400 @@ -0,0 +1,16 @@ +#This is a sample file distributed with Galaxy that enables BSMAP +#to use a directory of reference FastA sequences data files.The bsmap_fasta.loc +#file has this format (longer white space characters are TAB characters): +# +# +# +# +#Your bsmap_fasta.loc file should include an entry per line for each +reference you have stored. For example: +# +#phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fasta +#hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fasta +#hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fasta +#/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fasta +#...etc... +#