Mercurial > repos > ethevenot > multivariate
changeset 1:60c360e466a8 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 0f382a5296aae9bfc77df06b0a5ad493eb3c01f3
| author | ethevenot |
|---|---|
| date | Wed, 28 Feb 2018 10:04:14 -0500 |
| parents | 4b9488602d57 |
| children | |
| files | Makefile build.xml multivariate_config.xml runit/output/figure.pdf runit/output/information.txt |
| diffstat | 5 files changed, 27 insertions(+), 90 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Makefile Wed Feb 28 10:04:14 2018 -0500 @@ -0,0 +1,23 @@ +all: + +test: + test/test-multi + +planemo-venv/bin/planemo: planemo-venv + . planemo-venv/bin/activate && pip install --upgrade pip setuptools + . planemo-venv/bin/activate && pip install planemo + +planemo-venv: + virtualenv planemo-venv + +planemolint: planemo-venv/bin/planemo + . planemo-venv/bin/activate && planemo lint + +planemotest: planemo-venv/bin/planemo + . planemo-venv/bin/activate && planemo test --conda_dependency_resolution --galaxy_branch release_17.05 + +clean: + $(RM) -r $(HOME)/.planemo + $(RM) -r planemo-venv + +.PHONY: all clean test planemolint planemotest
--- a/build.xml Tue Oct 24 08:54:24 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,86 +0,0 @@ -<project name="multivariate" default="all"> - - <property name="tool.xml" value="multivariate_config.xml"/> - <property name="conda.dir" value="${user.home}/w4m-conda"/> - - <!--~~~ - ~ ALL ~ - ~~~~~--> - - <target name="all"/> - - <!--~~~~ - ~ TEST ~ - ~~~~~--> - - <target name="test" depends="plain.test,planemo.lint,planemo.test"/> - - <!--~~~~~~~~~~ - ~ PLAIN TEST ~ - ~~~~~~~~~~~--> - - <target name="plain.test"> - <exec executable="test/test-multi" failonerror="true"/> - </target> - - <!--~~~~~~~~~~~~ - ~ PLANEMO LINT ~ - ~~~~~~~~~~~~~--> - - <target name="planemo.lint"> - <exec executable="planemo" failonerror="true"> - <arg value="lint"/> - <arg value="${tool.xml}"/> - </exec> - </target> - - <!--~~~~~~~~~~~~ - ~ PLANEMO TEST ~ - ~~~~~~~~~~~~~--> - - <target name="planemo.test" depends="planemo.conda.install"> - <exec executable="planemo" failonerror="true"> - <arg value="test"/> - <arg value="--conda_prefix"/> - <arg value="${conda.dir}"/> - <arg value="--galaxy_branch"/> - <arg value="release_16.07"/> - <arg value="--conda_dependency_resolution"/> - <arg value="${tool.xml}"/> - </exec> - </target> - - <!--~~~~~~~~~~~~~~~~~~~~~ - ~ PLANEMO CONDA INSTALL ~ - ~~~~~~~~~~~~~~~~~~~~~~--> - - <target name="planemo.conda.install" depends="planemo.conda.init"> - <exec executable="planemo" failonerror="true"> - <arg value="conda_install"/> - <arg value="--conda_prefix"/> - <arg value="${conda.dir}"/> - <arg value="${tool.xml}"/> - </exec> - </target> - - <!--~~~~~~~~~~~~~~~~~~ - ~ PLANEMO CONDA INIT ~ - ~~~~~~~~~~~~~~~~~~~--> - - <target name="planemo.conda.init"> - <exec executable="planemo" failonerror="true"> - <arg value="conda_init"/> - <arg value="--conda_prefix"/> - <arg value="${conda.dir}"/> - </exec> - </target> - - <!--~~~~~ - ~ CLEAN ~ - ~~~~~~--> - - <target name="clean"> - <delete dir="${conda.dir}"/> - </target> - -</project>
--- a/multivariate_config.xml Tue Oct 24 08:54:24 2017 -0400 +++ b/multivariate_config.xml Wed Feb 28 10:04:14 2018 -0500 @@ -2,8 +2,8 @@ <description>PCA, PLS and OPLS</description> <requirements> - <requirement type="package">r-batch</requirement> - <requirement type="package">bioconductor-ropls</requirement> + <requirement type="package" version="1.1_4">r-batch</requirement> + <requirement type="package" version="1.10.0">bioconductor-ropls</requirement> </requirements> <stdio>
--- a/runit/output/information.txt Tue Oct 24 08:54:24 2017 -0400 +++ b/runit/output/information.txt Wed Feb 28 10:04:14 2018 -0500 @@ -1,5 +1,5 @@ -Start of the 'Multivariate' Galaxy module call: Tue 24 Oct 2017 02:50:53 PM +Start of the 'Multivariate' Galaxy module call: Mon 08 Jan 2018 05:24:55 PM PLS-DA @@ -11,7 +11,7 @@ p1 0.0505 0.0505 0.664 0.664 0.4220 0.422 R1 1 p2 0.0678 0.1180 0.105 0.769 -0.0431 0.397 NS 1 -End of 'Multivariate' Galaxy module call: 2017-10-24 14:50:54 +End of 'Multivariate' Galaxy module call: 2018-01-08 17:24:56