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annotate build.xml @ 0:81ffd91ba495 draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
author ethevenot
date Tue, 24 Oct 2017 09:32:23 -0400
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81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
diff changeset
1 <project name="heatmap" default="all">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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2
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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3 <property name="tool.xml" value="heatmap_config.xml"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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5
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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6 <!--~~~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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7 ~ ALL ~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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8 ~~~~~-->
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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9
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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10 <target name="all"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
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81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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12 <!--~~~~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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13 ~ TEST ~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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14 ~~~~~-->
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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15
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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16 <target name="test" depends="planemo.lint,planemo.test"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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18 <!--~~~~~~~~~~~~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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19 ~ PLANEMO LINT ~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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20 ~~~~~~~~~~~~~-->
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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22 <target name="planemo.lint">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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23 <exec executable="planemo" failonerror="true">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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24 <arg value="lint"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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25 <arg value="${tool.xml}"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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26 </exec>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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27 </target>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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28
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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29 <!--~~~~~~~~~~~~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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30 ~ PLANEMO TEST ~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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31 ~~~~~~~~~~~~~-->
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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32
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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33 <target name="planemo.test" depends="planemo.conda.install">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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34 <exec executable="planemo" failonerror="true">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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35 <arg value="test"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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36 <arg value="--conda_prefix"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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37 <arg value="${conda.dir}"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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38 <arg value="--galaxy_branch"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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39 <arg value="release_16.01"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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40 <arg value="--conda_dependency_resolution"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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41 <arg value="${tool.xml}"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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42 </exec>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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43 </target>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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44
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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45 <!--~~~~~~~~~~~~~~~~~~~~~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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46 ~ PLANEMO CONDA INSTALL ~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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47 ~~~~~~~~~~~~~~~~~~~~~~-->
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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48
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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49 <target name="planemo.conda.install" depends="planemo.conda.init">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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50 <exec executable="planemo" failonerror="true">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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51 <arg value="conda_install"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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52 <arg value="--conda_prefix"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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53 <arg value="${conda.dir}"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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54 <arg value="${tool.xml}"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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55 </exec>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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56 </target>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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57
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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58 <!--~~~~~~~~~~~~~~~~~~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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59 ~ PLANEMO CONDA INIT ~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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60 ~~~~~~~~~~~~~~~~~~~-->
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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61
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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62 <target name="planemo.conda.init">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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63 <exec executable="planemo" failonerror="true">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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64 <arg value="conda_init"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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65 <arg value="--conda_prefix"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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66 <arg value="${conda.dir}"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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67 </exec>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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68 </target>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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69
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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70 <!--~~~~~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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71 ~ CLEAN ~
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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72 ~~~~~~-->
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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73
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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74 <target name="clean">
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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75 <delete dir="${conda.dir}"/>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
parents:
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76 </target>
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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77
81ffd91ba495 planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
ethevenot
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78 </project>