# HG changeset patch
# User estrain
# Date 1562596141 14400
# Node ID 0dab43404e516ff63472add48308f0885f49cdf8
# Parent  a95774fab536799d5e5096b4a9ea9e6b5000a336
Uploaded

diff -r a95774fab536 -r 0dab43404e51 ganon.xml
--- a/ganon.xml	Sun Jul 07 22:17:02 2019 -0400
+++ b/ganon.xml	Mon Jul 08 10:29:01 2019 -0400
@@ -77,9 +77,9 @@
         -o results;
 
         #if $options.select == "advanced"
-          python $__tool_directory__/scoreGanon.py -t results.tre -f $fname -o score.tab -r $options.k -n $options.n
+          python $__tool_directory__/scoreGanon.py -t results.tre -f "$fname" -o score.tab -r $options.k -n $options.n
         #else  
-          python $__tool_directory__/scoreGanon.py -t results.tre -f $fname -o score.tab -r "genus species" -n 2
+          python $__tool_directory__/scoreGanon.py -t results.tre -f "$fname" -o score.tab -r "genus species" -n 2
         #end if
 
     ]]></command>