Mercurial > repos > estrain > data_manager_amrfinderplus

changeset 1:52dfa919bcca draft

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Uploaded
author estrain
date Sun, 22 May 2022 16:42:00 +0000
parents 804fd4d64485
children 985615d35727
files data_manager_amrfinderplus/data_manager_conf.xml
diffstat 1 files changed, 9 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_amrfinderplus/data_manager_conf.xml	Fri Mar 18 11:53:03 2022 +0000
+++ b/data_manager_amrfinderplus/data_manager_conf.xml	Sun May 22 16:42:00 2022 +0000
@@ -5,8 +5,16 @@
         <output>
           <column name="value" />
           <column name="name" />
-          <column name="path" />
           <column name="dbkey" />
+          <column name="path" >
+            <!-- note: the Python script sanitises the possibly user-supplied scheme name ('value') -->
+            <move type="directory" relativize_symlinks="True">
+              <src>${path}</src>
+              <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">amrfinderplus/</target>
+            </move>
+            <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/amrfinderplus/#echo str($value)#</value_translation>
+            <value_translation type="function">abspath</value_translation>
+          </column>
         </output>
       </data_table>
     </data_manager>