Mercurial > repos > estrain > data_manager_amrfinderplus

changeset 16:0f0d883cf2f7 draft

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Uploaded
author estrain
date Sun, 22 May 2022 19:39:06 +0000
parents e647e61de666
children 7788277f2b2c
files data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.xml	Sun May 22 19:38:49 2022 +0000
+++ b/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.xml	Sun May 22 19:39:06 2022 +0000
@@ -5,13 +5,13 @@
         <requirement type="package">hmmer</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        python $__tool_directory__/data_manager_amrfinderplus.py --name $amrdbname --out ${out_file};
+        python $__tool_directory__/data_manager_amrfinderplus.py --name $amrdbname --out ${output_file};
     ]]></command>
     <inputs>
       <param name="amrdbname" type="text" label="Name of amrFinderPlus database"/>
     </inputs>
     <outputs>
-        <data name="out_file" format="data_manager_json"/>
+        <data name="output_file" format="data_manager_json"/>
     </outputs>
     <tests>
         <test>