# HG changeset patch
# User estrain
# Date 1653244963 0
# Node ID 2ec5dcc42c634fd96fd702bfc7e89e938ff44fa3
# Parent  8072c9795674167395ca054b180047f9c02d9506
Uploaded

diff -r 8072c9795674 -r 2ec5dcc42c63 data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py
--- a/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py	Sun May 22 18:24:09 2022 +0000
+++ b/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py	Sun May 22 18:42:43 2022 +0000
@@ -58,7 +58,7 @@
     
     return version 
 
-def print_json (version,argskey,argspath,argsname,argsvalue,argsout):
+def print_json (version,argspath,argsname,argsout):
 
     valueentry="AMRFinderPlus_"+version
 
@@ -66,8 +66,7 @@
       'data_tables' : {
         'amrfinder_databases': [
           {
-            "dbkey":argskey,
-            "value":argsvalue,
+            "value":version,
             "name":argsname,
             "path":argspath,
           }
@@ -76,14 +75,13 @@
     }
 
     with open(argsout, 'w') as fh:
-      json.dump(data_table_entry,fh, sort_keys=True)
+      ##json.dump(data_table_entry,fh, sort_keys=True)
+      json.dump(data_table_entry, fh, indent=2, sort_keys=True)
         
 def main():
    
     parser = argparse.ArgumentParser(description='Download NCBI amrFinderPlus Databases')
     parser.add_argument('--name', type=str, required=True, nargs=1, help='Database name')
-    parser.add_argument('--value', type=str, required=True, nargs=1, help='Database value')
-    parser.add_argument('--key', type=str, required=True, nargs=1, help='Database value')
     parser.add_argument('--out', type=str, required=True, nargs=1, help='output file')
 
     args = parser.parse_args()
@@ -95,6 +93,6 @@
     os.chdir("..")
 
     #shutil.copytree("output",args.path[0])
-    print_json(version,args.key[0],os.path.abspath("output"),args.name[0],args.value[0],args.out[0])
+    print_json(version,os.path.abspath("output"),args.name[0],args.out[0])
 
 if __name__ == "__main__": main()