Mercurial > repos > eschen42 > mqppep_anova

diff mqppep_anova.R @ 7:d728198f1ba5 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 9a0fa6d0f9aadc069a5551a54da6daf307885637"
author eschen42
date Tue, 15 Mar 2022 00:35:16 +0000
parents d4d531006735
children b41a077af3aa
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line diff
--- a/mqppep_anova.R	Fri Mar 11 20:04:05 2022 +0000
+++ b/mqppep_anova.R	Tue Mar 15 00:35:16 2022 +0000
@@ -196,9 +196,12 @@
 #  from run to run
 set.seed(28571)
 
+
+library(tinytex)
+tinytex::install_tinytex()
 rmarkdown::render(
   input = paste(script_dir, "mqppep_anova_script.Rmd", sep = "/")
-, output_format = rmarkdown::html_document(pandoc_args = "--self-contained")
+, output_format = rmarkdown::pdf_document()
 , output_file = report_file_name
 , params = rmarkdown_params
 )