# HG changeset patch # User eric-rasche # Date 1488751337 18000 # Node ID 4ff5ff4c84fafc00cb80eaeb0c67b3c25444c7b0 # Parent b56f47c587793eafe7f66c5d81c47addc447bac2 planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit e4192d8d51efd2bf52c8094df65c164d90168e66 diff -r b56f47c58779 -r 4ff5ff4c84fa macros.xml --- a/macros.xml Wed Mar 01 23:56:56 2017 -0500 +++ b/macros.xml Sun Mar 05 17:02:17 2017 -0500 @@ -3,6 +3,7 @@ 0.9-RC1 + python bcbiogff circos diff -r b56f47c58779 -r 4ff5ff4c84fa unified-histogram.py --- a/unified-histogram.py Wed Mar 01 23:56:56 2017 -0500 +++ b/unified-histogram.py Sun Mar 05 17:02:17 2017 -0500 @@ -37,7 +37,7 @@ if chrom not in data: data[chrom] = {} - for i in xrange(chromStart, chromEnd): + for i in range(chromStart, chromEnd): if i not in data[chrom]: data[chrom][i] = {} @@ -55,7 +55,7 @@ for feature in record.features: if 'score' in feature.qualifiers: - for i in xrange(feature.location.start, feature.location.end): + for i in range(feature.location.start, feature.location.end): if i not in data[record.id]: data[record.id][i] = {} diff -r b56f47c58779 -r 4ff5ff4c84fa wiggle.py --- a/wiggle.py Wed Mar 01 23:56:56 2017 -0500 +++ b/wiggle.py Sun Mar 05 17:02:17 2017 -0500 @@ -6,7 +6,7 @@ stop_position = start_position + self.parserConfig['span'] - 1 self.stepIdx += 1 - for position in xrange(start_position, stop_position): + for position in range(start_position, stop_position): yield (self.parserConfig['chrom'], position, value) def variableStepParser(self, line): @@ -15,7 +15,7 @@ start_position = start stop_position = start + self.parserConfig['span'] - for position in xrange(start_position, stop_position): + for position in range(start_position, stop_position): yield (self.parserConfig['chrom'], position, value) def walk(self, handle):