# HG changeset patch
# User eric-rasche
# Date 1488751337 18000
# Node ID 4ff5ff4c84fafc00cb80eaeb0c67b3c25444c7b0
# Parent b56f47c587793eafe7f66c5d81c47addc447bac2
planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit e4192d8d51efd2bf52c8094df65c164d90168e66
diff -r b56f47c58779 -r 4ff5ff4c84fa macros.xml
--- a/macros.xml Wed Mar 01 23:56:56 2017 -0500
+++ b/macros.xml Sun Mar 05 17:02:17 2017 -0500
@@ -3,6 +3,7 @@
0.9-RC1
+ python
bcbiogff
circos
diff -r b56f47c58779 -r 4ff5ff4c84fa unified-histogram.py
--- a/unified-histogram.py Wed Mar 01 23:56:56 2017 -0500
+++ b/unified-histogram.py Sun Mar 05 17:02:17 2017 -0500
@@ -37,7 +37,7 @@
if chrom not in data:
data[chrom] = {}
- for i in xrange(chromStart, chromEnd):
+ for i in range(chromStart, chromEnd):
if i not in data[chrom]:
data[chrom][i] = {}
@@ -55,7 +55,7 @@
for feature in record.features:
if 'score' in feature.qualifiers:
- for i in xrange(feature.location.start, feature.location.end):
+ for i in range(feature.location.start, feature.location.end):
if i not in data[record.id]:
data[record.id][i] = {}
diff -r b56f47c58779 -r 4ff5ff4c84fa wiggle.py
--- a/wiggle.py Wed Mar 01 23:56:56 2017 -0500
+++ b/wiggle.py Sun Mar 05 17:02:17 2017 -0500
@@ -6,7 +6,7 @@
stop_position = start_position + self.parserConfig['span'] - 1
self.stepIdx += 1
- for position in xrange(start_position, stop_position):
+ for position in range(start_position, stop_position):
yield (self.parserConfig['chrom'], position, value)
def variableStepParser(self, line):
@@ -15,7 +15,7 @@
start_position = start
stop_position = start + self.parserConfig['span']
- for position in xrange(start_position, stop_position):
+ for position in range(start_position, stop_position):
yield (self.parserConfig['chrom'], position, value)
def walk(self, handle):