diff macros_conffiles.xml @ 6:169adf243c0a draft

planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit ee1fa2dab456c14a2538eb66033614e14a21a2ec

--- a/macros_conffiles.xml	Sat Jun 10 12:55:28 2017 -0400
+++ b/macros_conffiles.xml	Sat Jun 10 13:38:32 2017 -0400
@@ -249,6 +249,8 @@
                 #set cond = $condition.application.application_select
                 #if $cond == 'interchr' or $cond == 'intrachr' or $cond == 'inv' or $cond == 'rev'
                     condition = var($cond)
+                #elif $cond == 'always'
+                    condition = 1
                 #else
                     #set op = $condition.application.comparison.compare
                     #set val = $condition.application.comparison.compval
@@ -278,9 +280,18 @@
                 #set actiontype = $action.action.action_select
                 #set actionval = $action.action.action_value
                 #if $actiontype == 'color':
-                    #set actionval = $circosColor($actionval)
+                    #if $action.action.dynamic.dynamic_select == "static":
+                        #set actionval = $circosColor($actionval)
+                        $actiontype = $actionval
+                    #else
+                        #set x_fill_color = $action.action.dynamic.action_value
+                        #set x_fill_color_count = int(str($x_fill_color).split('-')[1]) + 1
+                        #set x_fill_color_qw = ' '.join(["%s-%s" % ($action.action.dynamic.action_value, $i) for i in range(1, $x_fill_color_count)])
+                        $actiontype = eval(qw(${x_fill_color_qw})[remap_int(var(value), ${action.action.dynamic.min_value}, ${action.action.dynamic.max_value}, 0, ${x_fill_color_count - 1})])
+                    #end if
+                #else
+                    $actiontype = $actionval
                 #end if
-                $actiontype = $actionval
             #end for
 
             $rule.continue_flow