diff macros.xml @ 6:169adf243c0a draft

planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit ee1fa2dab456c14a2538eb66033614e14a21a2ec

--- a/macros.xml	Sat Jun 10 12:55:28 2017 -0400
+++ b/macros.xml	Sat Jun 10 13:38:32 2017 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-  <token name="@WRAPPER_VERSION@">0.9-RC1</token>
+  <token name="@WRAPPER_VERSION@">0.9-RC2</token>
   <xml name="requirements">
       <requirements>
         <requirement type="package" version="0.69.4">circos</requirement>
@@ -202,6 +202,7 @@
             <repeat name="conditions" title="Conditions to Apply" help="Multiple conditions will be combined using AND">
                 <conditional name="application">
                     <param name="application_select" type="select" label="Condition">
+                        <option value="always">True / Always Applied</option>
                         <option value="interchr">Interchromosomal</option>
                         <option value="intrachr">Intrachromosomal</option>
                         <option value="chr">Chromosome</option>
@@ -253,6 +254,7 @@
                     <when value="inv"/>
                     <when value="interchr"/>
                     <when value="intrachr"/>
+                    <when value="always"/>
                 </conditional>
             </repeat>
             <repeat name="actions" title="Actions to Apply">
@@ -267,7 +269,20 @@
                         <param name="action_value" type="boolean" label="Show" truevalue="yes" falsevalue="no"/>
                     </when>
                     <when value="color">
-                        <expand macro="circos_color" label="Link Color" name="action_value"/>
+                        <conditional name="dynamic">
+                            <param name="dynamic_select" type="select" label="Static / Dynamic Change">
+                                <option value="static">Static: Change is always applied</option>
+                                <option value="dynamic">Dynamic: Change is sometimes applied</option>
+                            </param>
+                            <when value="static">
+                                <expand macro="circos_color" label="Link Color" name="action_value"/>
+                            </when>
+                            <when value="dynamic">
+                                <expand macro="brewer_scale" name="action_value" label="Fill Color"/>
+                                <param name="min_value" type="float" value="-1" label="Expected minimum value of dataset"/>
+                                <param name="max_value" type="float" value="1" label="Expected maximum value of dataset"/>
+                            </when>
+                        </conditional>
                     </when>
                     <when value="thickness">
                         <param name="action_value" type="integer" value="1" label="Thickness"/>