Mercurial > repos > eric-rasche > circos

comparison test-data/1/1.gff3 @ 9:e6440d0201f7 draft default tip

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planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit 7e335df423e3e06da3d33a5378a336a149e6cc6c
author eric-rasche
date Fri, 30 Jun 2017 06:48:38 -0400
parents e8475d0195fe
children
comparison
equal deleted inserted replaced
8:eb3af6e9f633 9:e6440d0201f7
23 ctgA example protein_coding_primary_transcript 1100 2000 . + . Name=Gene:hga;Alias=hga 23 ctgA example protein_coding_primary_transcript 1100 2000 . + . Name=Gene:hga;Alias=hga
24 ctgA example polypeptide 1200 1900 . + . Name=Protein:HGA;Alias=hga 24 ctgA example polypeptide 1200 1900 . + . Name=Protein:HGA;Alias=hga
25 ctgA example protein_coding_primary_transcript 1600 3000 . - . Name=Gene:hgb;Alias=hgb 25 ctgA example protein_coding_primary_transcript 1600 3000 . - . Name=Gene:hgb;Alias=hgb
26 ctgA example polypeptide 1800 2900 . - . Name=Protein:HGB;Alias=hgb 26 ctgA example polypeptide 1800 2900 . - . Name=Protein:HGB;Alias=hgb
27 27
28 ctgA example polypeptide_domain 11911 15561 . + . Name=m11;Note=kinase 28 ctgA example polypeptide_domain 11911 15561 . + 502 Name=m11;Note=kinase
29 ctgA example polypeptide_domain 13801 14007 . - . Name=m05;Note=helix loop helix 29 ctgA example polypeptide_domain 13801 14007 . - 415 Name=m05;Note=helix loop helix
30 ctgA example polypeptide_domain 14731 17239 . - . Name=m14;Note=kinase 30 ctgA example polypeptide_domain 14731 17239 . - 746 Name=m14;Note=kinase
31 ctgA example polypeptide_domain 15396 16159 . + . Name=m03;Note=zinc finger 31 ctgA example polypeptide_domain 15396 16159 . + 40 Name=m03;Note=zinc finger
32 ctgA example polypeptide_domain 17023 17675 . + . Name=m08;Note=7-transmembrane 32 ctgA example polypeptide_domain 17023 17675 . + 830 Name=m08;Note=7-transmembrane
33 ctgA example polypeptide_domain 17667 17690 . + . Name=m13;Note=DEAD box 33 ctgA example polypeptide_domain 17667 17690 . + 943 Name=m13;Note=DEAD box
34 ctgA example polypeptide_domain 18048 18552 . - . Name=m07;Note=7-transmembrane 34 ctgA example polypeptide_domain 18048 18552 . - 658 Name=m07;Note=7-transmembrane
35 ctgA example polypeptide_domain 21748 25612 . + . Name=m12;Note=kinase 35 ctgA example polypeptide_domain 21748 25612 . + 467 Name=m12;Note=kinase
36 ctgA example polypeptide_domain 28332 30033 . - . Name=m02;Note=HOX 36 ctgA example polypeptide_domain 28332 30033 . - 711 Name=m02;Note=HOX
37 ctgA example polypeptide_domain 28342 28447 . - . Name=m10;Note=DEAD box 37 ctgA example polypeptide_domain 28342 28447 . - 533 Name=m10;Note=DEAD box
38 ctgA example polypeptide_domain 30578 31748 . + . Name=m06;Note=SUSHI repeat 38 ctgA example polypeptide_domain 30578 31748 . + 646 Name=m06;Note=SUSHI repeat
39 ctgA example polypeptide_domain 33325 35791 . + . Name=m04;Note=Ig-like 39 ctgA example polypeptide_domain 33325 35791 . + 479 Name=m04;Note=Ig-like
40 ctgA example polypeptide_domain 37497 40559 . - . Name=m15;Note=7-transmembrane 40 ctgA example polypeptide_domain 37497 40559 . - 711 Name=m15;Note=7-transmembrane
41 ctgA example polypeptide_domain 46012 48851 . + . Name=m09;Note=kinase 41 ctgA example polypeptide_domain 46012 48851 . + 533 Name=m09;Note=kinase
42 ctgA example polypeptide_domain 48253 48366 . + . Name=m01;Note=WD40 42 ctgA example polypeptide_domain 48253 48366 . + 646 Name=m01;Note=WD40
43 43
44 ctgA example match 32329 32359 . + . Name=seg01 44 ctgA example match 32329 32359 . + 825 Name=seg01
45 ctgA example match 26122 26126 . + . Name=seg02 45 ctgA example match 26122 26126 . + 185 Name=seg02
46 ctgA example match 26497 26869 . + . Name=seg02 46 ctgA example match 26497 26869 . + 502 Name=seg02
47 ctgA example match 27201 27325 . + . Name=seg02 47 ctgA example match 27201 27325 . + 442 Name=seg02
48 ctgA example match 27372 27433 . + . Name=seg02 48 ctgA example match 27372 27433 . + 970 Name=seg02
49 ctgA example match 27565 27565 . + . Name=seg02 49 ctgA example match 27565 27565 . + 519 Name=seg02
50 ctgA example match 27813 28091 . + . Name=seg02 50 ctgA example match 27813 28091 . + 592 Name=seg02
51 ctgA example match 28093 28201 . + . Name=seg02 51 ctgA example match 28093 28201 . + 475 Name=seg02
52 ctgA example match 28329 28377 . + . Name=seg02 52 ctgA example match 28329 28377 . + 17 Name=seg02
53 ctgA example match 28829 29194 . + . Name=seg02 53 ctgA example match 28829 29194 . + 276 Name=seg02
54 ctgA example match 29517 29702 . + . Name=seg02 54 ctgA example match 29517 29702 . + 492 Name=seg02
55 ctgA example match 29713 30061 . + . Name=seg02 55 ctgA example match 29713 30061 . + 465 Name=seg02
56 ctgA example match 30329 30774 . + . Name=seg02 56 ctgA example match 30329 30774 . + 525 Name=seg02
57 ctgA example match 30808 31306 . + . Name=seg02 57 ctgA example match 30808 31306 . + 619 Name=seg02
58 ctgA example match 31516 31729 . + . Name=seg02 58 ctgA example match 31516 31729 . + 248 Name=seg02
59 ctgA example match 31753 32154 . + . Name=seg02 59 ctgA example match 31753 32154 . + 613 Name=seg02
60 ctgA example match 32595 32696 . + . Name=seg02 60 ctgA example match 32595 32696 . + 701 Name=seg02
61 ctgA example match 32892 32901 . + . Name=seg02 61 ctgA example match 32892 32901 . + 724 Name=seg02
62 ctgA example match 33127 33388 . + . Name=seg02 62 ctgA example match 33127 33388 . + 977 Name=seg02
63 ctgA example match 33439 33443 . + . Name=seg02 63 ctgA example match 33439 33443 . + 502 Name=seg02
64 ctgA example match 33759 34209 . + . Name=seg02 64 ctgA example match 33759 34209 . + 415 Name=seg02
65 ctgA example match 34401 34466 . + . Name=seg02 65 ctgA example match 34401 34466 . + 746 Name=seg02
66 ctgA example match 6885 7241 . - . Name=seg03 66 ctgA example match 6885 7241 . - 40 Name=seg03
67 ctgA example match 7410 7737 . - . Name=seg03 67 ctgA example match 7410 7737 . - 830 Name=seg03
68 ctgA example match 8055 8080 . - . Name=seg03 68 ctgA example match 8055 8080 . - 943 Name=seg03
69 ctgA example match 8306 8999 . - . Name=seg03 69 ctgA example match 8306 8999 . - 658 Name=seg03
70 ctgA example match 5233 5302 . - . Name=seg04 70 ctgA example match 5233 5302 . - 467 Name=seg04
71 ctgA example match 5800 6101 . - . Name=seg04 71 ctgA example match 5800 6101 . - 711 Name=seg04
72 ctgA example match 6442 6854 . - . Name=seg04 72 ctgA example match 6442 6854 . - 533 Name=seg04
73 ctgA example match 7106 7211 . - . Name=seg04 73 ctgA example match 7106 7211 . - 646 Name=seg04
74 ctgA example match 7695 8177 . - . Name=seg04 74 ctgA example match 7695 8177 . - 479 Name=seg04
75 ctgA example match 8545 8783 . - . Name=seg04 75 ctgA example match 8545 8783 . - 568 Name=seg04
76 ctgA example match 8869 8935 . - . Name=seg04 76 ctgA example match 8869 8935 . - 62 Name=seg04
77 ctgA example match 9404 9825 . - . Name=seg04 77 ctgA example match 9404 9825 . - 191 Name=seg04
78 ctgA example match 26503 26799 . - . Name=seg05 78 ctgA example match 26503 26799 . - 645 Name=seg05
79 ctgA example match 27172 27185 . - . Name=seg05 79 ctgA example match 27172 27185 . - 774 Name=seg05
80 ctgA example match 27448 27860 . - . Name=seg05 80 ctgA example match 27448 27860 . - 643 Name=seg05
81 ctgA example match 27887 28076 . - . Name=seg05 81 ctgA example match 27887 28076 . - 361 Name=seg05
82 ctgA example match 28225 28316 . - . Name=seg05 82 ctgA example match 28225 28316 . - 444 Name=seg05
83 ctgA example match 28777 29058 . - . Name=seg05 83 ctgA example match 28777 29058 . - 109 Name=seg05
84 ctgA example match 29513 29647 . - . Name=seg05 84 ctgA example match 29513 29647 . - 67 Name=seg05
85 ctgA example match 30108 30216 . - . Name=seg05 85 ctgA example match 30108 30216 . - 964 Name=seg05
86 ctgA example match 30465 30798 . - . Name=seg05 86 ctgA example match 30465 30798 . - 563 Name=seg05
87 ctgA example match 31232 31236 . - . Name=seg05 87 ctgA example match 31232 31236 . - 313 Name=seg05
88 ctgA example match 31421 31817 . - . Name=seg05 88 ctgA example match 31421 31817 . - 530 Name=seg05
89 ctgA example match 32010 32057 . - . Name=seg05 89 ctgA example match 32010 32057 . - 788 Name=seg05
90 ctgA example match 32208 32680 . - . Name=seg05 90 ctgA example match 32208 32680 . - 441 Name=seg05
91 ctgA example match 33053 33325 . - . Name=seg05 91 ctgA example match 33053 33325 . - 152 Name=seg05
92 ctgA example match 33438 33868 . - . Name=seg05 92 ctgA example match 33438 33868 . - 226 Name=seg05
93 ctgA example match 34244 34313 . - . Name=seg05 93 ctgA example match 34244 34313 . - 838 Name=seg05
94 ctgA example match 34605 34983 . - . Name=seg05 94 ctgA example match 34605 34983 . - 529 Name=seg05
95 ctgA example match 35333 35507 . - . Name=seg05 95 ctgA example match 35333 35507 . - 822 Name=seg05
96 ctgA example match 35642 35904 . - . Name=seg05 96 ctgA example match 35642 35904 . - 107 Name=seg05
97 ctgA example match 19249 19559 . + . Name=seg06 97 ctgA example match 19249 19559 . + 404 Name=seg06
98 ctgA example match 19975 20260 . + . Name=seg06 98 ctgA example match 19975 20260 . + 882 Name=seg06
99 ctgA example match 20379 20491 . + . Name=seg06 99 ctgA example match 20379 20491 . + 16 Name=seg06
100 ctgA example match 20533 21005 . + . Name=seg06 100 ctgA example match 20533 21005 . + 645 Name=seg06
101 ctgA example match 21122 21331 . + . Name=seg06 101 ctgA example match 21122 21331 . + 237 Name=seg06
102 ctgA example match 21682 22176 . + . Name=seg06 102 ctgA example match 21682 22176 . + 36 Name=seg06
103 ctgA example match 22374 22570 . + . Name=seg06 103 ctgA example match 22374 22570 . + 893 Name=seg06
104 ctgA example match 23025 23427 . + . Name=seg06 104 ctgA example match 23025 23427 . + 169 Name=seg06
105 ctgA example match 44191 44514 . - . Name=seg07 105 ctgA example match 44191 44514 . - 295 Name=seg07
106 ctgA example match 44552 45043 . - . Name=seg07 106 ctgA example match 44552 45043 . - 645 Name=seg07
107 ctgA example match 45373 45600 . - . Name=seg07 107 ctgA example match 45373 45600 . - 683 Name=seg07
108 ctgA example match 45897 46315 . - . Name=seg07 108 ctgA example match 45897 46315 . - 580 Name=seg07
109 ctgA example match 46491 46890 . - . Name=seg07 109 ctgA example match 46491 46890 . - 291 Name=seg07
110 ctgA example match 47126 47297 . - . Name=seg07 110 ctgA example match 47126 47297 . - 880 Name=seg07
111 ctgA example match 47735 47983 . - . Name=seg07 111 ctgA example match 47735 47983 . - 587 Name=seg07
112 ctgA example match 48447 48709 . - . Name=seg07 112 ctgA example match 48447 48709 . - 159 Name=seg07
113 ctgA example match 48931 49186 . - . Name=seg07 113 ctgA example match 48931 49186 . - 496 Name=seg07
114 ctgA example match 49472 49699 . - . Name=seg07 114 ctgA example match 49472 49699 . - 921 Name=seg07
115 ctgA example match 49957 50000 . - . Name=seg07 115 ctgA example match 49957 50000 . - 226 Name=seg07
116 ctgA example match 18509 18985 . + . Name=seg08 116 ctgA example match 18509 18985 . + 915 Name=seg08
117 ctgA example match 18989 19388 . + . Name=seg08 117 ctgA example match 18989 19388 . + 791 Name=seg08
118 ctgA example match 19496 19962 . + . Name=seg08 118 ctgA example match 19496 19962 . + 600 Name=seg08
119 ctgA example match 20093 20580 . + . Name=seg08 119 ctgA example match 20093 20580 . + 140 Name=seg08
120 ctgA example match 20970 21052 . + . Name=seg08 120 ctgA example match 20970 21052 . + 460 Name=seg08
121 ctgA example match 21270 21277 . + . Name=seg08 121 ctgA example match 21270 21277 . + 228 Name=seg08
122 ctgA example match 21685 22168 . + . Name=seg08 122 ctgA example match 21685 22168 . + 373 Name=seg08
123 ctgA example match 22564 22869 . + . Name=seg08 123 ctgA example match 22564 22869 . + 570 Name=seg08
124 ctgA example match 22958 23298 . + . Name=seg08 124 ctgA example match 22958 23298 . + 831 Name=seg08
125 ctgA example match 23412 23469 . + . Name=seg08 125 ctgA example match 23412 23469 . + 811 Name=seg08
126 ctgA example match 23932 23932 . + . Name=seg08 126 ctgA example match 23932 23932 . + 22 Name=seg08
127 ctgA example match 24328 24787 . + . Name=seg08 127 ctgA example match 24328 24787 . + 894 Name=seg08
128 ctgA example match 25228 25367 . + . Name=seg08 128 ctgA example match 25228 25367 . + 463 Name=seg08
129 ctgA example match 36616 37057 . - . Name=seg09 129 ctgA example match 36616 37057 . - 736 Name=seg09
130 ctgA example match 37208 37227 . - . Name=seg09 130 ctgA example match 37208 37227 . - 409 Name=seg09
131 ctgA example match 29771 29942 . + . Name=seg10 131 ctgA example match 29771 29942 . + 402 Name=seg10
132 ctgA example match 30042 30340 . + . Name=seg10 132 ctgA example match 30042 30340 . + 513 Name=seg10
133 ctgA example match 30810 31307 . + . Name=seg10 133 ctgA example match 30810 31307 . + 22 Name=seg10
134 ctgA example match 31761 31984 . + . Name=seg10 134 ctgA example match 31761 31984 . + 228 Name=seg10
135 ctgA example match 32374 32937 . + . Name=seg10 135 ctgA example match 32374 32937 . + 752 Name=seg10
136 ctgA example match 24228 24510 . + . Name=seg11 136 ctgA example match 24228 24510 . + 35 Name=seg11
137 ctgA example match 24868 25012 . + . Name=seg11 137 ctgA example match 24868 25012 . + 276 Name=seg11
138 ctgA example match 25212 25426 . + . Name=seg11 138 ctgA example match 25212 25426 . + 709 Name=seg11
139 ctgA example match 25794 25874 . + . Name=seg11 139 ctgA example match 25794 25874 . + 666 Name=seg11
140 ctgA example match 26075 26519 . + . Name=seg11 140 ctgA example match 26075 26519 . + 604 Name=seg11
141 ctgA example match 26930 26940 . + . Name=seg11 141 ctgA example match 26930 26940 . + 31 Name=seg11
142 ctgA example match 26975 27063 . + . Name=seg11 142 ctgA example match 26975 27063 . + 764 Name=seg11
143 ctgA example match 27415 27799 . + . Name=seg11 143 ctgA example match 27415 27799 . + 973 Name=seg11
144 ctgA example match 27880 27943 . + . Name=seg11 144 ctgA example match 27880 27943 . + 823 Name=seg11
145 ctgA example match 28225 28346 . + . Name=seg11 145 ctgA example match 28225 28346 . + 931 Name=seg11
146 ctgA example match 28375 28570 . + . Name=seg11 146 ctgA example match 28375 28570 . + 697 Name=seg11
147 ctgA example match 28758 29041 . + . Name=seg11 147 ctgA example match 28758 29041 . + 241 Name=seg11
148 ctgA example match 29101 29302 . + . Name=seg11 148 ctgA example match 29101 29302 . + 343 Name=seg11
149 ctgA example match 29604 29702 . + . Name=seg11 149 ctgA example match 29604 29702 . + 771 Name=seg11
150 ctgA example match 29867 29885 . + . Name=seg11 150 ctgA example match 29867 29885 . + 147 Name=seg11
151 ctgA example match 30241 30246 . + . Name=seg11 151 ctgA example match 30241 30246 . + 949 Name=seg11
152 ctgA example match 30575 30738 . + . Name=seg11 152 ctgA example match 30575 30738 . + 928 Name=seg11
153 ctgA example match 12531 12895 . + . Name=seg12 153 ctgA example match 12531 12895 . + 693 Name=seg12
154 ctgA example match 13122 13449 . + . Name=seg12 154 ctgA example match 13122 13449 . + 750 Name=seg12
155 ctgA example match 13452 13745 . + . Name=seg12 155 ctgA example match 13452 13745 . + 502 Name=seg12
156 ctgA example match 13908 13965 . + . Name=seg12 156 ctgA example match 13908 13965 . + 177 Name=seg12
157 ctgA example match 13998 14488 . + . Name=seg12 157 ctgA example match 13998 14488 . + 605 Name=seg12
158 ctgA example match 14564 14899 . + . Name=seg12 158 ctgA example match 14564 14899 . + 939 Name=seg12
159 ctgA example match 15185 15276 . + . Name=seg12 159 ctgA example match 15185 15276 . + 249 Name=seg12
160 ctgA example match 15639 15736 . + . Name=seg12 160 ctgA example match 15639 15736 . + 597 Name=seg12
161 ctgA example match 15745 15870 . + . Name=seg12 161 ctgA example match 15745 15870 . + 364 Name=seg12
162 ctgA example match 49406 49476 . + . Name=seg13 162 ctgA example match 49406 49476 . + 706 Name=seg13
163 ctgA example match 49762 50000 . + . Name=seg13 163 ctgA example match 49762 50000 . + 605 Name=seg13
164 ctgA example match 41137 41318 . - . Name=seg14 164 ctgA example match 41137 41318 . - 729 Name=seg14
165 ctgA example match 41754 41948 . - . Name=seg14 165 ctgA example match 41754 41948 . - 21 Name=seg14
166 ctgA example match 42057 42474 . - . Name=seg14 166 ctgA example match 42057 42474 . - 63 Name=seg14
167 ctgA example match 42890 43270 . - . Name=seg14 167 ctgA example match 42890 43270 . - 356 Name=seg14
168 ctgA example match 43395 43811 . - . Name=seg14 168 ctgA example match 43395 43811 . - 70 Name=seg14
169 ctgA example match 44065 44556 . - . Name=seg14 169 ctgA example match 44065 44556 . - 430 Name=seg14
170 ctgA example match 44763 45030 . - . Name=seg14 170 ctgA example match 44763 45030 . - 730 Name=seg14
171 ctgA example match 45231 45488 . - . Name=seg14 171 ctgA example match 45231 45488 . - 531 Name=seg14
172 ctgA example match 45790 46022 . - . Name=seg14 172 ctgA example match 45790 46022 . - 247 Name=seg14
173 ctgA example match 46092 46318 . - . Name=seg14 173 ctgA example match 46092 46318 . - 552 Name=seg14
174 ctgA example match 46816 46992 . - . Name=seg14 174 ctgA example match 46816 46992 . - 547 Name=seg14
175 ctgA example match 47449 47829 . - . Name=seg14 175 ctgA example match 47449 47829 . - 879 Name=seg14
176 ctgA example match 39265 39361 . - . Name=seg15 176 ctgA example match 39265 39361 . - 750 Name=seg15
177 ctgA example match 39753 40034 . - . Name=seg15 177 ctgA example match 39753 40034 . - 875 Name=seg15
178 ctgA example match 40515 40954 . - . Name=seg15 178 ctgA example match 40515 40954 . - 135 Name=seg15
179 ctgA example match 41252 41365 . - . Name=seg15 179 ctgA example match 41252 41365 . - 534 Name=seg15
180 ctgA example match 41492 41504 . - . Name=seg15 180 ctgA example match 41492 41504 . - 653 Name=seg15
181 ctgA example match 41941 42377 . - . Name=seg15 181 ctgA example match 41941 42377 . - 374 Name=seg15
182 ctgA example match 42748 42954 . - . Name=seg15 182 ctgA example match 42748 42954 . - 847 Name=seg15
183 ctgA example match 43401 43897 . - . Name=seg15 183 ctgA example match 43401 43897 . - 15 Name=seg15
184 ctgA example match 44043 44113 . - . Name=seg15 184 ctgA example match 44043 44113 . - 905 Name=seg15
185 ctgA example match 44399 44888 . - . Name=seg15 185 ctgA example match 44399 44888 . - 868 Name=seg15
186 ctgA example match 45281 45375 . - . Name=seg15 186 ctgA example match 45281 45375 . - 462 Name=seg15
187 ctgA example match 45711 46041 . - . Name=seg15 187 ctgA example match 45711 46041 . - 262 Name=seg15
188 ctgA example match 46425 46564 . - . Name=seg15 188 ctgA example match 46425 46564 . - 823 Name=seg15
189 ctgA example match 46738 47087 . - . Name=seg15 189 ctgA example match 46738 47087 . - 7 Name=seg15
190 ctgA example match 47329 47595 . - . Name=seg15 190 ctgA example match 47329 47595 . - 928 Name=seg15
191 ctgA example match 47858 47979 . - . Name=seg15 191 ctgA example match 47858 47979 . - 64 Name=seg15
192 ctgA example match 48169 48453 . - . Name=seg15 192 ctgA example match 48169 48453 . - 305 Name=seg15
193 193
194 # single exon gene - one CDS only 194 # single exon gene - one CDS only
195 ctgA bare_predicted CDS 10000 11500 . + 0 Name=Apple1;Note=CDS with no parent 195 ctgA bare_predicted CDS 10000 11500 . + 0 Name=Apple1;Note=CDS with no parent
196 196
197 # multi-exon gene - several linked CDSs 197 # multi-exon gene - several linked CDSs