Mercurial > repos > eric-rasche > circos
comparison unified-histogram.py @ 4:4ff5ff4c84fa draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit e4192d8d51efd2bf52c8094df65c164d90168e66
author | eric-rasche |
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date | Sun, 05 Mar 2017 17:02:17 -0500 |
parents | b56f47c58779 |
children | b25b3518c2ce |
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3:b56f47c58779 | 4:4ff5ff4c84fa |
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35 chromEnd = lineData[2] | 35 chromEnd = lineData[2] |
36 | 36 |
37 if chrom not in data: | 37 if chrom not in data: |
38 data[chrom] = {} | 38 data[chrom] = {} |
39 | 39 |
40 for i in xrange(chromStart, chromEnd): | 40 for i in range(chromStart, chromEnd): |
41 if i not in data[chrom]: | 41 if i not in data[chrom]: |
42 data[chrom][i] = {} | 42 data[chrom][i] = {} |
43 | 43 |
44 data[chrom][i][idx] = lineData[5] | 44 data[chrom][i][idx] = lineData[5] |
45 | 45 |
53 if record.id not in data: | 53 if record.id not in data: |
54 data[record.id] = {} | 54 data[record.id] = {} |
55 | 55 |
56 for feature in record.features: | 56 for feature in record.features: |
57 if 'score' in feature.qualifiers: | 57 if 'score' in feature.qualifiers: |
58 for i in xrange(feature.location.start, feature.location.end): | 58 for i in range(feature.location.start, feature.location.end): |
59 if i not in data[record.id]: | 59 if i not in data[record.id]: |
60 data[record.id][i] = {} | 60 data[record.id][i] = {} |
61 | 61 |
62 data[record.id][i][idx] = feature.qualifiers['score'][0] | 62 data[record.id][i][idx] = feature.qualifiers['score'][0] |
63 | 63 |