comparison unified-histogram.py @ 4:4ff5ff4c84fa draft

planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit e4192d8d51efd2bf52c8094df65c164d90168e66
author eric-rasche
date Sun, 05 Mar 2017 17:02:17 -0500
parents b56f47c58779
children b25b3518c2ce
comparison
equal deleted inserted replaced
3:b56f47c58779 4:4ff5ff4c84fa
35 chromEnd = lineData[2] 35 chromEnd = lineData[2]
36 36
37 if chrom not in data: 37 if chrom not in data:
38 data[chrom] = {} 38 data[chrom] = {}
39 39
40 for i in xrange(chromStart, chromEnd): 40 for i in range(chromStart, chromEnd):
41 if i not in data[chrom]: 41 if i not in data[chrom]:
42 data[chrom][i] = {} 42 data[chrom][i] = {}
43 43
44 data[chrom][i][idx] = lineData[5] 44 data[chrom][i][idx] = lineData[5]
45 45
53 if record.id not in data: 53 if record.id not in data:
54 data[record.id] = {} 54 data[record.id] = {}
55 55
56 for feature in record.features: 56 for feature in record.features:
57 if 'score' in feature.qualifiers: 57 if 'score' in feature.qualifiers:
58 for i in xrange(feature.location.start, feature.location.end): 58 for i in range(feature.location.start, feature.location.end):
59 if i not in data[record.id]: 59 if i not in data[record.id]:
60 data[record.id][i] = {} 60 data[record.id][i] = {}
61 61
62 data[record.id][i][idx] = feature.qualifiers['score'][0] 62 data[record.id][i][idx] = feature.qualifiers['score'][0]
63 63