view create_features_from_gff3.xml @ 8:df7a90763b3c draft default tip

planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 37aa8fa02c144220da9a3899644025b8c19697c9

<?xml version="1.0"?>
<tool id="edu.tamu.cpt2.webapollo.feat_from_gff3" name="GFF3 to Apollo Annotations" version="0.9">
  <description></description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <code file="webapollo.py"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[
python $__tool_directory__/create_features_from_gff3.py
@ADMIN_AUTH@
@ORG_OR_GUESS@

"$__user_email__"
$gff3_data
--source "${__app__.config.galaxy_infrastructure_url}history/view/${__app__.security.encode_id($input.history_id)}"

> $output]]></command>
  <inputs>
    <expand macro="org_or_guess" />
    <expand macro="gff3_input" />
  </inputs>
  <outputs>
	<data format="tabular" name="output" label="Process and Error Log"/>
  </outputs>
  <help><![CDATA[
**NOTA BENE**

This is **incredibly, highly experimental**

DO NOT:

-  Run on gff3 referencing multiple reference sequences/contigs
-  Expect it to work well
-  Expect it to work at all

@REFERENCES@
]]></help>
</tool>