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view create_features_from_gff3.xml @ 2:c8e16c8eff98 draft

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planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 6944305517dcccad3e6b37f8aba0b43ccb004540
author eric-rasche
date Tue, 03 May 2016 13:48:11 -0400
parents 6002cc0df04e
children
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<?xml version="1.0"?>
<tool id="edu.tamu.cpt2.webapollo.feat_from_gff3" name="WA2: Create Features from GFF3" version="0.1">
  <description></description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[
python $__tool_directory__/create_features_from_gff3.py
@AUTH@
@CN_OR_GUESS@
"$__user_email__"
$gff3_data
> $output]]></command>
  <inputs>
    <expand macro="cn_or_guess" />
    <expand macro="gff3_input" />
  </inputs>
  <outputs>
    <data format="json" name="output"/>
  </outputs>
  <help><![CDATA[
**NOTA BENE**

This is **incredibly, highly experimental*

DO NOT:

-  Run on gff3 referencing multiple reference sequences/contigs
-  Expect it to work well
-  Expect it to work at all


@REFERENCES@
]]></help>
</tool>