Mercurial > repos > eric-rasche > apollo
view list_organisms.py @ 5:7610987e0c48 draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
author | eric-rasche |
---|---|
date | Wed, 01 Mar 2017 22:39:58 -0500 |
parents | d4ae83dedb14 |
children | f9a6e151b3b4 |
line wrap: on
line source
#!/usr/bin/env python import json import argparse from webapollo import WAAuth, WebApolloInstance, AssertUser, accessible_organisms if __name__ == '__main__': parser = argparse.ArgumentParser(description='List all organisms available in an Apollo instance') WAAuth(parser) parser.add_argument('email', help='User Email') args = parser.parse_args() wa = WebApolloInstance(args.apollo, args.username, args.password) gx_user = AssertUser(wa.users.loadUsers(email=args.email)) all_orgs = wa.organisms.findAllOrganisms() orgs = accessible_organisms(gx_user, all_orgs) print(json.dumps(orgs, indent=2))