Mercurial > repos > eric-rasche > apollo
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planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
author | eric-rasche |
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date | Wed, 01 Mar 2017 22:39:58 -0500 |
parents | d4ae83dedb14 |
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# galaxy-apollo Galaxy tools to interface with Apollo The webapollo.py file is also [separately available](https://github.com/erasche/python-apollo) as a pip-installable package. ## ENV The following environment variables must be set: ENV | Use --- | --- `$GALAXY_WEBAPOLLO_URL` | The URL at which Apollo is accessible, internal to Galaxy and where the tools run. Must be absolute, with FQDN and protocol. `$GALAXY_WEBAPOLLO_USER` | The admin user which Galaxy should use to talk to Apollo. `$GALAXY_WEBAPOLLO_PASSWORD` | The password for the admin user. `$GALAXY_WEBAPOLLO_EXT_URL` | The external URL at which Apollo is accessible to end users. May be relative or absolute. `$GALAXY_SHARED_DIR` | Directory shared between Galaxy and Apollo, used to exchange JBrowse instances. ## License All python scripts, wrappers, and the webapollo.py are licensed under MIT license.