Mercurial > repos > eric-rasche > apollo
diff export.xml @ 0:6002cc0df04e draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
| author | eric-rasche |
|---|---|
| date | Tue, 03 May 2016 13:38:55 -0400 |
| parents | |
| children | d4ae83dedb14 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/export.xml Tue May 03 13:38:55 2016 -0400 @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool id="edu.tamu.cpt2.webapollo.export" name="WA2: Retrieve/Export data" version="1.4"> + <description>from WebApollo into Galaxy</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="aggressive"><![CDATA[ +python $__tool_directory__/export.py + +@AUTH@ + +@CN_OR_GUESS@ + +--gff $gff_out +--fasta $fasta_out + +]]></command> + <inputs> + <expand macro="cn_or_guess" /> + </inputs> + <outputs> + <data format="gff3" name="gff_out" /> + <data format="fasta" name="fasta_out"/> + </outputs> + <help><![CDATA[ +**What it does** + +Exports the GFF3/Fasta sequence from WebApollo. + +@REFERENCES@ + ]]></help> +</tool>
