diff export.xml @ 0:6002cc0df04e draft

planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
author eric-rasche
date Tue, 03 May 2016 13:38:55 -0400
parents
children d4ae83dedb14
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/export.xml	Tue May 03 13:38:55 2016 -0400
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+<?xml version="1.0"?>
+<tool id="edu.tamu.cpt2.webapollo.export" name="WA2: Retrieve/Export data" version="1.4">
+  <description>from WebApollo into Galaxy</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+python $__tool_directory__/export.py
+
+@AUTH@
+
+@CN_OR_GUESS@
+
+--gff $gff_out
+--fasta $fasta_out
+
+]]></command>
+  <inputs>
+    <expand macro="cn_or_guess" />
+  </inputs>
+  <outputs>
+    <data format="gff3" name="gff_out" />
+    <data format="fasta" name="fasta_out"/>
+  </outputs>
+  <help><![CDATA[
+**What it does**
+
+Exports the GFF3/Fasta sequence from WebApollo.
+
+@REFERENCES@
+      ]]></help>
+</tool>