Mercurial > repos > eric-rasche > apollo

diff create_features_from_gff3.xml @ 0:6002cc0df04e draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
author: eric-rasche
date: Tue, 03 May 2016 13:38:55 -0400
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/create_features_from_gff3.xml	Tue May 03 13:38:55 2016 -0400
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool id="edu.tamu.cpt2.webapollo.feat_from_gff3" name="WA2: Create Features from GFF3" version="0.1">
+  <description></description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+python $__tool_directory__/create_features_from_gff3.py
+@AUTH@
+@CN_OR_GUESS@
+"$__user_email__"
+$gff3_data
+> $output]]></command>
+  <inputs>
+    <expand macro="cn_or_guess" />
+    <expand macro="gff3_input" />
+  </inputs>
+  <outputs>
+    <data format="json" name="output"/>
+  </outputs>
+  <help><![CDATA[
+**NOTA BENE**
+
+This is **incredibly, highly experimental*
+
+DO NOT:
+
+-  Run on gff3 referencing multiple reference sequences/contigs
+-  Expect it to work well
+-  Expect it to work at all
+
+
+@REFERENCES@
+]]></help>
+</tool>