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planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
author eric-rasche
date Thu, 12 Jan 2017 11:52:28 -0500
parents 6002cc0df04e
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2:c8e16c8eff98 3:d4ae83dedb14
1 # galaxy-webapollo 1 # galaxy-apollo
2 2
3 Galaxy tools to interface with WebApollo 3 Galaxy tools to interface with Apollo
4 The webapollo.py file is also [separately available](https://github.com/erasche/python-apollo) as a pip-installable package. 4 The webapollo.py file is also [separately available](https://github.com/erasche/python-apollo) as a pip-installable package.
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6 ## ENV
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8 The following environment variables must be set:
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11 ENV | Use
12 --- | ---
13 `$GALAXY_WEBAPOLLO_URL` | The URL at which Apollo is accessible, internal to Galaxy and where the tools run. Must be absolute, with FQDN and protocol.
14 `$GALAXY_WEBAPOLLO_USER` | The admin user which Galaxy should use to talk to Apollo.
15 `$GALAXY_WEBAPOLLO_PASSWORD` | The password for the admin user.
16 `$GALAXY_WEBAPOLLO_EXT_URL` | The external URL at which Apollo is accessible to end users. May be relative or absolute.
17 `$GALAXY_SHARED_DIR` | Directory shared between Galaxy and Apollo, used to exchange JBrowse instances.
5 18
6 ## License 19 ## License
7 20
8 All python scripts, wrappers, and the webapollo.py are licensed under MIT license. 21 All python scripts, wrappers, and the webapollo.py are licensed under MIT license.