# HG changeset patch
# User elixir-it
# Date 1592403770 0
# Node ID 2d8f37e3b77411ca56cbaf83dd0066d0e1b752df
# Parent  a3342d37ab295519e79b1b4bc93b69a7162b904a
Uploaded

diff -r a3342d37ab29 -r 2d8f37e3b774 survival.R
--- a/survival.R	Tue Jun 09 16:15:40 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,30 +0,0 @@
-#!/usr/bin/env Rscript
-args <- commandArgs(trailingOnly = TRUE)
-fileR=args[1]
-fileT=args[2]
-ofile=args[3]
-data_R=read.table(fileR,header=T)
-data_T=read.table(fileT,header=T)
-
-#P=wilcox.test(data_R$Score,data_T$Score,alternative="gr")$p.value
-range= rev(seq(min(data_R$VINYL_score),max(data_R$VINYL_score),0.5))
-header=paste("Cut-off","PosD","PosH","FisherPV","OR",sep="\t");
-cat(header,file=ofile,sep="\n",append=T)
-
-m=matrix(ncol=2,nrow=2)
-totR=nrow(data_R)
-totT=nrow(data_T)
-for (r in range)
-{
-	posR=sum(data_R$VINYL_score>=r);
-	posT=sum(data_T$VINYL_score>=r);
-	m[,1]=c(posR,totR);
-	m[,2]=c(posT,totT);
-	
-	F=fisher.test(m,alternative="greater")
-	Fpv=F$p.value
-	Fodds=F$estimate
-
-	string=paste(r,posR,posT,Fpv,Fodds,sep="\t")
-	cat(string,file=ofile,sep="\n",append=T)
-}
diff -r a3342d37ab29 -r 2d8f37e3b774 survival_M.R
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/survival_M.R	Wed Jun 17 14:22:50 2020 +0000
@@ -0,0 +1,30 @@
+#!/usr/bin/env Rscript
+args <- commandArgs(trailingOnly = TRUE)
+fileR=args[1]
+fileT=args[2]
+ofile=args[3]
+data_R=read.table(fileR,header=T)
+data_T=read.table(fileT,header=T)
+
+#P=wilcox.test(data_R$Score,data_T$Score,alternative="gr")$p.value
+range= rev(seq(min(data_R$VINYL_score),max(data_R$VINYL_score),0.5))
+header=paste("Cut-off","PosD","PosH","FisherPV","OR",sep="\t");
+cat(header,file=ofile,sep="\n",append=T)
+
+m=matrix(ncol=2,nrow=2)
+totR=nrow(data_R)
+totT=nrow(data_T)
+for (r in range)
+{
+	posR=sum(data_R$VINYL_score>=r);
+	posT=sum(data_T$VINYL_score>=r);
+	m[,1]=c(posR,totR);
+	m[,2]=c(posT,totT);
+	
+	F=fisher.test(m,alternative="greater")
+	Fpv=F$p.value
+	Fodds=F$estimate
+
+	string=paste(r,posR,posT,Fpv,Fodds,sep="\t")
+	cat(string,file=ofile,sep="\n",append=T)
+}