Mercurial > repos > elixir-it > vinyl_optimizer
diff optimizer_genetic.xml @ 1:35c308dd6420 draft
Uploaded
| author | elixir-it |
|---|---|
| date | Wed, 22 Jul 2020 19:08:23 +0000 |
| parents | 4c6529d120c3 |
| children | 6e4eb4856874 |
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--- a/optimizer_genetic.xml Tue Jun 09 16:07:19 2020 +0000 +++ b/optimizer_genetic.xml Wed Jul 22 19:08:23 2020 +0000 @@ -149,38 +149,15 @@ </stdio> <tests> <test> - <param name="fileR" value="R.csv" ftype="csv" /> - <param name="fileC" value="T.csv" ftype="csv" /> - <!-- default values--> - <param name="score_DB_MIN" value="1" type="float" min="1" max="20" /> - <param name="score_DB_MAX" value="20" type="float" min="1" max="20" /> - <param name="score_RV_MIN" value="1" type="float" min="1" max="20" /> - <param name="score_RV_MAX" value="20" type="float" min="1" max="20" /> - <param name="score_FE_MIN" value="1" min="1" max="20" type="float" /> - <param name="score_FE_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_NS_MIN" value="1" min="1" max="20" type="float" /> - <param name="score_NS_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_OR_MIN" value="1" type="float" min="1" max="20" /> - <param name="score_OR_MAX" value="20" type="float" min="1" max="20" /> - <param name="score_eQ_MIN" value="1" min="1" max="20" type="float" /> - <param name="score_eQ_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_AD_MIN" value="1" min="1" max="20" type="float" /> - <param name="score_AD_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_T_MIN" value="1" min="1" max="20" type="float" /> - <param name="score_T_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_GW_MIN" value="1" min="1" max="20" type="float" /> - <param name="score_GW_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_M_MIN" value="1" min="1" max="20" type="float" /> - <param name="score_M_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_R_MIN" value="1" min="1" max="10" type="float" /> - <param name="score_R_MAX" value="20" min="1" max="20" type="float" /> - <param name="score_SP_MIN" value="1" min="1" max="10" type="float" /> - <param name="score_SP_MAX" value="20" min="1" max="20" type="float" /> - <param name="nind" value="5" type="integer" /> - <param name="AF" value="0.0001" min="0" max="1" type="float" /> - <param name="AD" type="text" value="T" /> - <param name="XL" type="text" value="F" /> - <output name="ofile" file="optimizer_output_test.tsv" ftype="tsv" /> + <param name="fileR" value="TSI_annotated.vcf" ftype="vcf" /> + <param name="fileC" value="sorrentino_annotated.vcf" ftype="vcf" /> + <param name="lgenes" value="DCM_genes.tabular" ftype="tabular" /> + <param name="qfile" value="qfile.txt" ftype="txt" /> + <param name="kfile" value="kfile.txt" ftype="txt" /> + <param name="efile" value="efile.txt" ftype="txt" /> + <param name="sfile" value="sfile.txt" ftype="txt" /> + <output name="ofile" file="output_optimizer.tsv" ftype="tsv" /> + <output name="log" file="log.txt" ftype="txt" /> </test> </tests> <help>